var/log/Blitz-0.log0000664000175000017500000006320111461312113013374 0ustar omeroomero2010-10-25 17:17:30,783 INFO [ ome.services.blitz.Entry] ( main) Creating OMERO.blitz. Please wait... 2010-10-25 17:17:39,372 INFO [ng.ShutdownSafeEhcacheManagerFactoryBean] ( main) Initializing EHCache CacheManager 2010-10-25 17:17:45,775 INFO [ ome.services.fulltext.FullTextAnalyzer] ( main) Initialized FullTextAnalyzer 2010-10-25 17:17:46,038 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,063 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,083 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,166 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,168 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,174 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,175 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,194 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:46,245 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:59,538 INFO [ ome.services.db.DatabaseIdentity] ( main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:1ef0b5c3-2e8f-4411-a9cc-529296cc49db_%s%s 2010-10-25 17:18:00,461 INFO [ ome.services.fulltext.FullTextThread] ( main) Initializing Full-Text Indexer 2010-10-25 17:18:00,500 INFO [ ome.services.util.DBPatchCheck] ( main) Verified database patch: OMERO4.2__0 2010-10-25 17:18:03,370 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2010-10-25 17:18:03,371 INFO [ ome.services.util.ServerVersionCheck] ( main) OMERO Version: Beta-4.2.0-r7571-b29 Ready. 2010-10-25 17:18:03,371 INFO [ ome.services.util.ServerVersionCheck] ( main) ------------------------------------------------- 2010-10-25 17:18:06,072 INFO [ ome.system.UpgradeCheck] ( main) no update needed 2010-10-25 17:18:06,093 INFO [ ome.tools.hibernate.ExtendedMetadata] ( main) Calculating ExtendedMetadata... 2010-10-25 17:18:06,150 INFO [.services.scheduler.SchedulerFactoryBean] ( main) Starting Quartz Scheduler now 2010-10-25 17:18:07,012 INFO [e.services.blitz.util.BlitzConfiguration] ( main) Initializing Ice.Communicator 2010-10-25 17:18:08,089 INFO [ ome.services.blitz.fire.Ring] ( main) Checking cluster 2010-10-25 17:18:08,594 INFO [ ome.services.blitz.fire.Registry] ( main) Found 0 cluster node(s) : [] 2010-10-25 17:18:08,595 INFO [ ome.services.blitz.fire.Ring] ( main) Got 0 cluster uuids : [] 2010-10-25 17:18:08,615 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.getManagerList 2010-10-25 17:18:08,615 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, ome.tools.spring.InternalServiceFactory@da67a4] 2010-10-25 17:18:08,755 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=null(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:08,846 INFO [ org.perf4j.TimingLogger] ( main) start[1288016288615] time[230] tag[omero.call.success] 2010-10-25 17:18:08,848 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: (23cd919f-4c90-4092-9f73-5ff2f7bb3e78) 2010-10-25 17:18:08,848 INFO [ ome.services.blitz.fire.Ring] ( main) Purging node: 23cd919f-4c90-4092-9f73-5ff2f7bb3e78 2010-10-25 17:18:08,931 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.executeUpdate - set closed = now() 2010-10-25 17:18:08,932 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, ome.tools.spring.InternalServiceFactory@11067af] 2010-10-25 17:18:09,092 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=101(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:09,146 INFO [ org.perf4j.TimingLogger] ( main) start[1288016288932] time[214] tag[omero.call.success] 2010-10-25 17:18:09,146 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: 0 2010-10-25 17:18:09,146 INFO [ ome.services.blitz.fire.Ring] ( main) Removed 0 entries with value 23cd919f-4c90-4092-9f73-5ff2f7bb3e78 2010-10-25 17:18:09,148 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.setManagerDown 2010-10-25 17:18:09,148 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, ome.tools.spring.InternalServiceFactory@823618] 2010-10-25 17:18:09,171 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=102(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:09,188 INFO [ org.perf4j.TimingLogger] ( main) start[1288016289148] time[40] tag[omero.call.success] 2010-10-25 17:18:09,188 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: 1 2010-10-25 17:18:09,188 INFO [ ome.services.blitz.fire.Ring] ( main) Removed manager: 23cd919f-4c90-4092-9f73-5ff2f7bb3e78 2010-10-25 17:18:09,188 INFO [ ome.services.blitz.fire.Ring] ( main) handleRingShutdown: 23cd919f-4c90-4092-9f73-5ff2f7bb3e78 2010-10-25 17:18:09,190 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.blitz.fire.Ring.addManager 2010-10-25 17:18:09,190 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, ome.tools.spring.InternalServiceFactory@d2bee] 2010-10-25 17:18:09,210 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=103(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:09,220 INFO [ ome.security.basic.CurrentDetails] ( main) Adding log:INSERT,class ome.model.meta.Node,101 2010-10-25 17:18:09,235 INFO [ org.perf4j.TimingLogger] ( main) start[1288016289190] time[45] tag[omero.call.success] 2010-10-25 17:18:09,236 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: ome.model.meta.Node:Id_101 2010-10-25 17:18:09,248 INFO [ ome.services.blitz.fire.Registry] ( main) Added ClusterNode/2a23ca6f-b318-45f4-84c9-5116aff69fe1 to registry 2010-10-25 17:18:09,313 INFO [ ome.services.util.ServiceHandler] ( main) Executor.doWork -- ome.services.scripts.ScriptRepoHelper.loadAll(true) 2010-10-25 17:18:09,313 INFO [ ome.services.util.ServiceHandler] ( main) Args: [null, ome.tools.spring.InternalServiceFactory@13b64eb] 2010-10-25 17:18:09,334 INFO [ ome.security.basic.EventHandler] ( main) Auth: user=0,group=0,event=104(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:09,542 INFO [ org.perf4j.TimingLogger] ( main) start[1288016289313] time[229] tag[omero.call.success] 2010-10-25 17:18:09,542 INFO [ ome.services.util.ServiceHandler] ( main) Rslt: (ome.model.core.OriginalFile:Id_1, ome.model.core.OriginalFile:Id_2, ome.model.core.OriginalFile:Id_3, ... 8 more) 2010-10-25 17:18:09,593 INFO [.services.blitz.repo.AbstractRepositoryI] ( main) Initializing repository in /OMERO/ 2010-10-25 17:18:09,604 INFO [.services.blitz.repo.AbstractRepositoryI] ( main) Initializing repository in /OMERO/OMERO.server-Beta-4.2.0/./lib/scripts 2010-10-25 17:18:09,734 INFO [ ome.services.util.ServiceHandler] (r_Worker-0) Executor.doWork -- ome.services.blitz.repo.ScriptRepositoryI.takeover 2010-10-25 17:18:09,767 INFO [ ome.services.util.ServiceHandler] (r_Worker-0) Args: [null, ome.tools.spring.InternalServiceFactory@572090] 2010-10-25 17:18:09,729 INFO [ ome.services.util.ServiceHandler] (r_Worker-1) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.takeover 2010-10-25 17:18:09,767 INFO [ ome.services.util.ServiceHandler] (r_Worker-1) Args: [null, ome.tools.spring.InternalServiceFactory@1ddeda2] 2010-10-25 17:18:09,729 INFO [ ome.services.util.ServiceHandler] (r_Worker-9) Executor.doWork -- ome.services.roi.GeomTool.backgroundSynchronization 2010-10-25 17:18:09,768 INFO [ ome.services.util.ServiceHandler] (r_Worker-9) Args: [null, ome.tools.spring.InternalServiceFactory@11c4041] 2010-10-25 17:18:09,990 INFO [ ome.security.basic.EventHandler] (r_Worker-1) Auth: user=0,group=0,event=105(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:09,998 INFO [ ome.security.basic.EventHandler] (r_Worker-0) Auth: user=0,group=0,event=106(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:10,019 INFO [.services.blitz.repo.AbstractRepositoryI] (r_Worker-1) Opened repository OMERO (uuid=51de56f4-a2e8-4da5-a30b-939f2b763a42) 2010-10-25 17:18:10,009 INFO [.services.blitz.repo.AbstractRepositoryI] (r_Worker-0) Opened repository scripts (uuid=ScriptRepo) 2010-10-25 17:18:10,819 INFO [ ome.security.basic.EventHandler] (r_Worker-9) Auth: user=0,group=0,event=107(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:10,900 INFO [ org.perf4j.TimingLogger] (r_Worker-9) start[1288016289768] time[1132] tag[omero.call.success] 2010-10-25 17:18:10,901 INFO [ ome.services.util.ServiceHandler] (r_Worker-9) Rslt: null 2010-10-25 17:18:10,932 INFO [ ome.services.blitz.fire.Registry] (r_Worker-0) Updated InternalRepository-ScriptRepo in registry 2010-10-25 17:18:10,943 INFO [ ome.services.blitz.fire.Registry] (r_Worker-0) Updated PublicRepository-ScriptRepo in registry 2010-10-25 17:18:10,957 INFO [ ome.services.blitz.fire.Registry] (r_Worker-1) Updated InternalRepository-51de56f4-a2e8-4da5-a30b-939f2b763a42 in registry 2010-10-25 17:18:10,964 INFO [ ome.services.blitz.fire.Registry] (r_Worker-1) Updated PublicRepository-51de56f4-a2e8-4da5-a30b-939f2b763a42 in registry 2010-10-25 17:18:10,975 INFO [.services.blitz.repo.AbstractRepositoryI] (r_Worker-1) Repository now active 2010-10-25 17:18:10,981 INFO [ org.perf4j.TimingLogger] (r_Worker-1) start[1288016289767] time[1214] tag[omero.call.success] 2010-10-25 17:18:10,981 INFO [ ome.services.util.ServiceHandler] (r_Worker-1) Rslt: ome.model.core.OriginalFile:Id_12 2010-10-25 17:18:10,983 INFO [ ome.services.util.ServiceHandler] (r_Worker-1) Executor.doWork -- ome.services.blitz.repo.LegacyRepositoryI.getDescription(12) 2010-10-25 17:18:10,983 INFO [ ome.services.util.ServiceHandler] (r_Worker-1) Args: [null, ome.tools.spring.InternalServiceFactory@1e5d207] 2010-10-25 17:18:10,985 INFO [ ome.security.basic.EventHandler] (r_Worker-1) Auth: user=0,group=0,event=null(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:11,046 INFO [.services.blitz.repo.AbstractRepositoryI] (r_Worker-0) Repository now active 2010-10-25 17:18:11,055 INFO [ org.perf4j.TimingLogger] (r_Worker-0) start[1288016289767] time[1288] tag[omero.call.success] 2010-10-25 17:18:11,055 INFO [ ome.services.util.ServiceHandler] (r_Worker-0) Rslt: ome.model.core.OriginalFile:Id_13 2010-10-25 17:18:11,056 INFO [ ome.services.util.ServiceHandler] (r_Worker-0) Executor.doWork -- ome.services.blitz.repo.ScriptRepositoryI.getDescription(13) 2010-10-25 17:18:11,056 INFO [ ome.services.util.ServiceHandler] (r_Worker-0) Args: [null, ome.tools.spring.InternalServiceFactory@dcdeae] 2010-10-25 17:18:11,061 INFO [ ome.security.basic.EventHandler] (r_Worker-0) Auth: user=0,group=0,event=null(Internal),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:11,366 INFO [ org.perf4j.TimingLogger] (r_Worker-1) start[1288016290983] time[383] tag[omero.call.success] 2010-10-25 17:18:11,366 INFO [ ome.services.util.ServiceHandler] (r_Worker-1) Rslt: ome.model.core.OriginalFile:Id_12 2010-10-25 17:18:11,373 INFO [ org.perf4j.TimingLogger] (r_Worker-0) start[1288016291056] time[317] tag[omero.call.success] 2010-10-25 17:18:11,373 INFO [ ome.services.util.ServiceHandler] (r_Worker-0) Rslt: ome.model.core.OriginalFile:Id_13 2010-10-25 17:18:11,870 INFO [ ome.services.blitz.util.CheckAllJobs] ( Thread-7) Waiting 120 secs. for callbacks 2010-10-25 17:18:11,938 INFO [ ome.services.blitz.Entry] ( main) OMERO.blitz now accepting connections. 2010-10-25 17:18:19,060 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession 2010-10-25 17:18:19,060 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Args: [null, ome.tools.spring.InternalServiceFactory@e02fc4] 2010-10-25 17:18:19,103 INFO [ ome.security.basic.EventHandler] (l.Server-8) Auth: user=0,group=0,event=108(Sessions),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:18:19,183 INFO [ ome.security.basic.CurrentDetails] (l.Server-8) Adding log:INSERT,class ome.model.meta.Session,207 2010-10-25 17:18:19,263 INFO [ org.perf4j.TimingLogger] (l.Server-8) start[1288016299060] time[203] tag[omero.call.success] 2010-10-25 17:18:19,263 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more) 2010-10-25 17:18:19,270 INFO [ ome.services.licenses.Store] (l.Server-8) Acquired license from example license store. 2010-10-25 17:18:19,272 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Server-8) Created session 4190f255-a215-46af-a207-f1a66fcf9bea for user root 2010-10-25 17:18:19,321 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-1) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:18:19,339 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-0) Added servant to adapter: 4190f255-a215-46af-a207-f1a66fcf9bea/d1e99f7d-76cc-4765-ac69-991795db52bdomero.grid.SharedResources(omero.grid._SharedResourcesTie@ef57f8) 2010-10-25 17:18:19,394 INFO [ ome.services.blitz.util.CheckAllJobs] (l.Server-3) Received 0 job(s) 2010-10-25 17:18:31,321 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:19:31,326 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:20:31,334 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:21:00,022 INFO [ ome.services.blitz.fire.SessionManagerI] (r_Worker-6) Performing requestHeartbeats 2010-10-25 17:21:31,336 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-2) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:22:31,338 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-1) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:23:31,340 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-0) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:24:00,023 INFO [ ome.services.blitz.fire.SessionManagerI] (r_Worker-9) Performing requestHeartbeats 2010-10-25 17:24:31,343 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-9) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:25:31,346 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-3) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:26:31,349 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-6) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:27:00,022 INFO [ ome.services.blitz.fire.SessionManagerI] (r_Worker-1) Performing requestHeartbeats 2010-10-25 17:27:25,663 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Executor.doWork -- ome.services.sessions.SessionManagerImpl.executeCheckPasswordRO(root) 2010-10-25 17:27:25,665 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Args: [null, ome.tools.spring.InternalServiceFactory@1aa8b42] 2010-10-25 17:27:25,706 INFO [ ome.security.basic.EventHandler] (l.Server-7) Auth: user=0,group=0,event=null(Sessions),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:27:25,829 INFO [ org.perf4j.TimingLogger] (l.Server-7) start[1288016845665] time[164] tag[omero.call.success] 2010-10-25 17:27:25,830 INFO [ ome.services.util.ServiceHandler] (l.Server-7) Rslt: true 2010-10-25 17:27:25,847 INFO [ ome.services.util.ServiceHandler] (l.Server-4) Executor.doWork -- ome.services.sessions.SessionManagerImpl.createSession 2010-10-25 17:27:25,847 INFO [ ome.services.util.ServiceHandler] (l.Server-4) Args: [null, ome.tools.spring.InternalServiceFactory@13596e0] 2010-10-25 17:27:25,935 INFO [ ome.security.basic.EventHandler] (l.Server-4) Auth: user=0,group=0,event=109(Sessions),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:27:26,011 INFO [ ome.security.basic.CurrentDetails] (l.Server-4) Adding log:INSERT,class ome.model.meta.Session,208 2010-10-25 17:27:26,106 INFO [ org.perf4j.TimingLogger] (l.Server-4) start[1288016845847] time[259] tag[omero.call.success] 2010-10-25 17:27:26,106 INFO [ ome.services.util.ServiceHandler] (l.Server-4) Rslt: (ome.model.meta.Experimenter:Id_0, ome.model.meta.ExperimenterGroup:Id_0, [0, 1], ... 4 more) 2010-10-25 17:27:26,109 INFO [ ome.services.licenses.Store] (l.Server-4) Acquired license from example license store. 2010-10-25 17:27:26,164 INFO [ ome.services.blitz.fire.SessionManagerI] (l.Server-4) Created session 6a69feec-02d6-4fc4-8f60-b0e0879a8a2b for user root 2010-10-25 17:27:26,303 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Added servant to adapter: 6a69feec-02d6-4fc4-8f60-b0e0879a8a2b/5e8b1e7b-6ca2-4bc4-bce9-3dedd0239181omero.api.ISession(omero.api._ISessionTie@19f9088) 2010-10-25 17:27:26,339 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Meth: interface ome.api.ISession.getSession 2010-10-25 17:27:26,339 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Args: [6a69feec-02d6-4fc4-8f60-b0e0879a8a2b] 2010-10-25 17:27:26,339 INFO [ org.perf4j.TimingLogger] (l.Server-2) start[1288016846339] time[0] tag[omero.call.success] 2010-10-25 17:27:26,340 INFO [ ome.services.util.ServiceHandler] (l.Server-2) Rslt: ome.model.meta.Session:Id_208 2010-10-25 17:27:26,622 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-1) Added servant to adapter: 6a69feec-02d6-4fc4-8f60-b0e0879a8a2b/5e8b1e7b-6ca2-4bc4-bce9-3dedd0239181omero.api.IAdmin(omero.api._IAdminTie@1cbcc56) 2010-10-25 17:27:26,675 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Meth: interface ome.api.IAdmin.getEventContext 2010-10-25 17:27:26,676 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Args: () 2010-10-25 17:27:26,678 INFO [ ome.security.basic.EventHandler] (l.Server-9) Auth: user=0,group=0,event=null(Internal),sess=6a69feec-02d6-4fc4-8f60-b0e0879a8a2b 2010-10-25 17:27:26,680 INFO [ org.perf4j.TimingLogger] (l.Server-9) start[1288016846676] time[4] tag[omero.call.success] 2010-10-25 17:27:26,680 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Rslt: ome.system.SimpleEventContext@68a2cc 2010-10-25 17:27:26,696 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Meth: interface ome.api.IAdmin.getExperimenter 2010-10-25 17:27:26,696 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Args: [0] 2010-10-25 17:27:26,727 INFO [ ome.security.basic.EventHandler] (l.Server-9) Auth: user=0,group=0,event=110(Internal),sess=6a69feec-02d6-4fc4-8f60-b0e0879a8a2b 2010-10-25 17:27:26,752 INFO [ org.perf4j.TimingLogger] (l.Server-9) start[1288016846696] time[56] tag[omero.call.success] 2010-10-25 17:27:26,753 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Rslt: ome.model.meta.Experimenter:Id_0 2010-10-25 17:27:26,762 INFO [ ome.services.util.ServiceHandler] (l.Server-6) Meth: interface ome.api.IAdmin.lookupGroup 2010-10-25 17:27:26,762 INFO [ ome.services.util.ServiceHandler] (l.Server-6) Args: [user] 2010-10-25 17:27:26,790 INFO [ ome.security.basic.EventHandler] (l.Server-6) Auth: user=0,group=0,event=111(Internal),sess=6a69feec-02d6-4fc4-8f60-b0e0879a8a2b 2010-10-25 17:27:26,847 INFO [ org.perf4j.TimingLogger] (l.Server-6) start[1288016846762] time[85] tag[omero.call.success] 2010-10-25 17:27:26,848 INFO [ ome.services.util.ServiceHandler] (l.Server-6) Rslt: ome.model.meta.ExperimenterGroup:Id_1 2010-10-25 17:27:26,854 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-7) Keep alive: 6a69feec-02d6-4fc4-8f60-b0e0879a8a2b 2010-10-25 17:27:26,876 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-7) Added servant to adapter: 6a69feec-02d6-4fc4-8f60-b0e0879a8a2b/5e8b1e7b-6ca2-4bc4-bce9-3dedd0239181omero.api.IConfig(omero.api._IConfigTie@1b5459e) 2010-10-25 17:27:26,895 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Meth: interface ome.api.IConfig.getVersion 2010-10-25 17:27:26,895 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Args: () 2010-10-25 17:27:26,930 INFO [ ome.security.basic.EventHandler] (l.Server-8) Auth: user=0,group=0,event=112(Internal),sess=6a69feec-02d6-4fc4-8f60-b0e0879a8a2b 2010-10-25 17:27:26,937 INFO [ org.perf4j.TimingLogger] (l.Server-8) start[1288016846895] time[42] tag[omero.call.success] 2010-10-25 17:27:26,938 INFO [ ome.services.util.ServiceHandler] (l.Server-8) Rslt: 4.2.0 2010-10-25 17:27:31,354 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:28:31,356 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-5) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea 2010-10-25 17:29:07,625 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Executor.doWork -- ome.services.sessions.SessionManagerImpl.executeCheckPasswordRO(root) 2010-10-25 17:29:07,625 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Args: [null, ome.tools.spring.InternalServiceFactory@e3f8b9] 2010-10-25 17:29:07,640 INFO [ ome.security.basic.EventHandler] (l.Server-0) Auth: user=0,group=0,event=null(Sessions),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:29:07,654 INFO [ org.perf4j.TimingLogger] (l.Server-0) start[1288016947626] time[28] tag[omero.call.success] 2010-10-25 17:29:07,654 INFO [ ome.services.util.ServiceHandler] (l.Server-0) Rslt: false 2010-10-25 17:29:07,713 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Executor.doWork -- ome.services.sessions.SessionManagerImpl.executeCheckPasswordRO(root) 2010-10-25 17:29:07,713 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Args: [null, ome.tools.spring.InternalServiceFactory@3171e] 2010-10-25 17:29:07,717 INFO [ ome.security.basic.EventHandler] (l.Server-1) Auth: user=0,group=0,event=null(Sessions),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:29:07,728 INFO [ org.perf4j.TimingLogger] (l.Server-1) start[1288016947713] time[15] tag[omero.call.success] 2010-10-25 17:29:07,729 INFO [ ome.services.util.ServiceHandler] (l.Server-1) Rslt: false 2010-10-25 17:29:07,887 INFO [ ome.services.util.ServiceHandler] (l.Server-3) Executor.doWork -- ome.services.sessions.SessionManagerImpl.executeCheckPasswordRO(root) 2010-10-25 17:29:07,889 INFO [ ome.services.util.ServiceHandler] (l.Server-3) Args: [null, ome.tools.spring.InternalServiceFactory@1bd871] 2010-10-25 17:29:07,891 INFO [ ome.security.basic.EventHandler] (l.Server-3) Auth: user=0,group=0,event=null(Sessions),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:29:07,896 INFO [ org.perf4j.TimingLogger] (l.Server-3) start[1288016947889] time[7] tag[omero.call.success] 2010-10-25 17:29:07,897 INFO [ ome.services.util.ServiceHandler] (l.Server-3) Rslt: false 2010-10-25 17:29:07,903 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Executor.doWork -- ome.services.sessions.SessionManagerImpl.executeCheckPasswordRO(root) 2010-10-25 17:29:07,903 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Args: [null, ome.tools.spring.InternalServiceFactory@1e26e12] 2010-10-25 17:29:07,905 INFO [ ome.security.basic.EventHandler] (l.Server-9) Auth: user=0,group=0,event=null(Sessions),sess=2a23ca6f-b318-45f4-84c9-5116aff69fe1 2010-10-25 17:29:07,907 INFO [ org.perf4j.TimingLogger] (l.Server-9) start[1288016947903] time[4] tag[omero.call.success] 2010-10-25 17:29:07,907 INFO [ ome.services.util.ServiceHandler] (l.Server-9) Rslt: false 2010-10-25 17:29:31,358 INFO [ ome.services.blitz.impl.ServiceFactoryI] (l.Server-4) Keep alive: 4190f255-a215-46af-a207-f1a66fcf9bea var/log/DropBox.log0000664000175000017500000000141011461310573013532 0ustar omeroomero2010-10-25 17:17:31,244 ERROR [ fsclient.DropBox] (MainThread) System requirements not met: Traceback (most recent call last): File "lib/python/fsDropBox.py", line 66, in run fsUtil.monitorPackage() File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/fsUtil.py", line 117, in monitorPackage raise Exception("Libraries required by OMERO.fs monitor unavailable: " + errorString) Exception: Libraries required by OMERO.fs monitor unavailable: pynotify version 0.8.5 is not compatible with Python 2.4. Install 0.8.5 or lower to use DropBox 2010-10-25 17:17:31,246 ERROR [ fsclient.DropBox] (MainThread) Quitting 2010-10-25 17:17:31,249 INFO [ fsclient.DropBox] (MainThread) Exiting with exit code: -1 var/log/FileServer.log0000664000175000017500000000016211461310567014231 0ustar omeroomero2010-10-25 17:17:27,727 INFO [ fsserver.FileServer] (MainThread) Started OMERO.fs FileServer var/log/Indexer-0.log0000664000175000017500000000557411461310633013724 0ustar omeroomero2010-10-25 17:17:28,670 INFO [ ome.services.blitz.Entry] ( main) Creating ome.fulltext. Please wait... 2010-10-25 17:17:32,485 INFO [ng.ShutdownSafeEhcacheManagerFactoryBean] ( main) Initializing EHCache CacheManager 2010-10-25 17:17:40,330 INFO [ ome.services.fulltext.FullTextAnalyzer] ( main) Initialized FullTextAnalyzer 2010-10-25 17:17:41,329 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:41,352 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:41,370 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:41,696 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:41,698 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:41,703 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:41,704 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:42,027 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:42,070 WARN [ch.engine.DocumentBuilderContainedEntity] ( main) @DocumentId specified on an entity which is not indexed by itself. Annotation gets ignored. Use @Field instead. 2010-10-25 17:17:58,521 INFO [ ome.services.fulltext.FullTextThread] ( main) Initializing Full-Text Indexer 2010-10-25 17:17:59,539 INFO [ ome.services.db.DatabaseIdentity] ( main) Using LSID format: urn:lsid:export.openmicroscopy.org:%s:1ef0b5c3-2e8f-4411-a9cc-529296cc49db_%s%s 2010-10-25 17:18:00,480 INFO [ ome.tools.hibernate.ExtendedMetadata] ( main) Calculating ExtendedMetadata... 2010-10-25 17:18:00,936 INFO [.services.scheduler.SchedulerFactoryBean] ( main) Starting Quartz Scheduler now 2010-10-25 17:18:02,140 INFO [ ome.security.basic.CurrentDetails] (r_Worker-1) Adding log:INSERT,class ome.model.meta.Session,157 2010-10-25 17:18:03,230 INFO [ ome.services.blitz.Entry] ( main) ome.fulltext now accepting connections. var/log/master.err0000664000175000017500000000022011461310566013457 0ustar omeroomeroTraceback (most recent call last): File "lib/python/runTables.py", line 13, in ? __import__("tables") ImportError: No module named tables var/log/master.out0000664000175000017500000000000011461310564013470 0ustar omeroomerovar/log/MonitorServer.log0000664000175000017500000000166011461310567015005 0ustar omeroomero2010-10-25 17:17:27,743 ERROR [ fsserver.MonitorServer] (MainThread) System requirements not met: Traceback (most recent call last): File "lib/python/fsServerMS.py", line 43, in run import fsMonitorServer File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/fsMonitorServer.py", line 23, in ? from fsMonitor import MonitorFactory File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/fsMonitor.py", line 21, in ? PlatformMonitor = __import__(fsUtil.monitorPackage()) File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/fsUtil.py", line 117, in monitorPackage raise Exception("Libraries required by OMERO.fs monitor unavailable: " + errorString) Exception: Libraries required by OMERO.fs monitor unavailable: pynotify version 0.8.5 is not compatible with Python 2.4. Install 0.8.5 or lower to use DropBox 2010-10-25 17:17:27,782 INFO [ fsserver.MonitorServer] (MainThread) Exiting with exit code: -1 var/log/OMEROweb.log0000664000175000017500000000771111461312063013542 0ustar omeroomeroMon, 25 Oct 2010 17:25:17 root INFO Application Starting... Mon, 25 Oct 2010 17:25:41 root INFO Application Starting... Mon, 25 Oct 2010 15:25:48 views-feedback ERROR handler404: Page not found Mon, 25 Oct 2010 15:25:48 views-feedback ERROR Traceback (most recent call last): File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/django/core/handlers/base.py", line 82, in get_response callback, callback_args, callback_kwargs = resolver.resolve( File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/django/core/urlresolvers.py", line 233, in resolve raise Resolver404, {'tried': tried, 'path': new_path} Resolver404: {'path': u'', 'tried': ['^favicon\\.ico$', '^appmedia/webgateway/(?P.*)$', '^appmedia/omeroweb/(?P.*)$', '^appmedia/(?P.*)$', '(?i)^webadmin/', '(?i)^webclient/', '(?i)^feedback/', '(?i)^webgateway/', '(?i)^webtest/']} Mon, 25 Oct 2010 15:25:49 views-admin INFO INIT '16965' Mon, 25 Oct 2010 15:25:49 views-web INFO INIT '16965' Mon, 25 Oct 2010 15:27:25 omero.util.UpgradeCheck INFO no update needed Mon, 25 Oct 2010 15:27:25 webgateway INFO getBlitzConnection(host=localhost, port=4064, ssl=True, username=root) Mon, 25 Oct 2010 15:27:26 blitz_gateway INFO created connection (uuid=6a69feec-02d6-4fc4-8f60-b0e0879a8a2b) Mon, 25 Oct 2010 15:29:07 omero.util.UpgradeCheck INFO no update needed Mon, 25 Oct 2010 15:29:07 webgateway INFO getBlitzConnection(host=localhost, port=4064, ssl=True, username=root) Mon, 25 Oct 2010 15:29:07 blitz_gateway INFO BlitzGateway.connect().createSession(): Traceback (most recent call last): File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/omero/gateway/__init__.py", line 1072, in connect self._createSession() File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/omero/gateway/__init__.py", line 966, in _createSession self._ic_props[omero.constants.PASSWORD]) File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/omero/clients.py", line 443, in createSession prx = self.getRouter(self.__ic).createSession(username, password, ctx) File "/usr/lib/python2.3/site-packages/Ice/Glacier2_Router_ice.py", line 107, in createSession return _M_Glacier2.Router._op_createSession.invoke(self, ((userId, password), _ctx)) PermissionDeniedException: exception ::Glacier2::PermissionDeniedException { reason = Password check failed } Mon, 25 Oct 2010 15:29:07 webgateway ERROR Critical error during connect, retrying after _purge Mon, 25 Oct 2010 15:29:07 webgateway INFO reached connector_pool_size (70), size after purge: (1) Mon, 25 Oct 2010 15:29:07 blitz_gateway INFO BlitzGateway.connect().createSession(): Traceback (most recent call last): File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/omero/gateway/__init__.py", line 1072, in connect self._createSession() File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/omero/gateway/__init__.py", line 966, in _createSession self._ic_props[omero.constants.PASSWORD]) File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/omero/clients.py", line 443, in createSession prx = self.getRouter(self.__ic).createSession(username, password, ctx) File "/usr/lib/python2.3/site-packages/Ice/Glacier2_Router_ice.py", line 107, in createSession return _M_Glacier2.Router._op_createSession.invoke(self, ((userId, password), _ctx)) PermissionDeniedException: exception ::Glacier2::PermissionDeniedException { reason = Password check failed } Mon, 25 Oct 2010 15:29:07 webgateway ERROR Critical error during connect, retrying after _purge Mon, 25 Oct 2010 15:29:07 webgateway INFO reached connector_pool_size (70), size after purge: (1) Mon, 25 Oct 2010 15:29:07 views-admin INFO Have connection as Guest Mon, 25 Oct 2010 15:29:07 views-admin ERROR Traceback (most recent call last): File "/OMERO/OMERO.server-Beta-4.2.0/lib/python/omeroweb/webadmin/views.py", line 100, in _checkVersion agent = conn.getServerVersion() AttributeError: 'NoneType' object has no attribute 'getServerVersion' var/log/Processor-0.log0000664000175000017500000000167011461310653014300 0ustar omeroomero2010-10-25 17:17:31,150 INFO [ omero.util.Server] (MainThread) ******************************************************************************** 2010-10-25 17:17:31,150 INFO [ omero.util.Server] (MainThread) Starting 2010-10-25 17:17:31,319 INFO [ omero.util.Resources] (Thread-2 ) Starting 2010-10-25 17:18:09,033 INFO [ omero.utils] (MainThread) Failed to get session on attempt 1 2010-10-25 17:18:19,321 INFO [ omero.processor.ProcessorI] (MainThread) Registering processor Processor -t @ Processor-0.ProcessorAdapter 2010-10-25 17:18:19,379 INFO [ omero.remote] (Dummy-3 ) Meth: ProcessorI.requestRunning 2010-10-25 17:18:19,381 INFO [ omero.remote] (Dummy-3 ) Rslt: None 2010-10-25 17:18:19,414 INFO [ omero.util.Server] (MainThread) Entering main loop