Unable to open Kodak .bip file

General user discussion about using the Bio-Formats library.

Unable to open Kodak .bip file

Postby mobtgmjb » Fri May 11, 2012 11:03 pm

I hope someone can help. I'm trying to open a kodak .bip file without much luck. I have read the previous post from "jeeep" and have managed to download and open jeeep's .bip file. I guess my file is a slightly different format. The error being reported by ImageJ is as follows:

java.lang.NullPointerException
at loci.formats.in.KodakReader.readExtraMetadata(KodakReader.java:162)
at loci.formats.in.KodakReader.initFile(KodakReader.java:125)
at loci.formats.FormatReader.setId(FormatReader.java:1091)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:480)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:139)
at loci.plugins.in.Importer.run(Importer.java:77)
at loci.plugins.LociImporter.run(LociImporter.java:79)
at ij.IJ.runUserPlugIn(IJ.java:183)
at ij.IJ.runPlugIn(IJ.java:150)
at ij.Executer.runCommand(Executer.java:127)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:619)

Any help would be gratefully received.
mobtgmjb
 
Posts: 1
Joined: Fri May 11, 2012 10:52 pm

Re: Unable to open Kodak .bip file

Postby mlinkert » Sun May 13, 2012 11:15 pm

Hi,


I hope someone can help. I'm trying to open a kodak .bip file without much luck. I have read the previous post from "jeeep" and have managed to download and open jeeep's .bip file. I guess my file is a slightly different format. The error being reported by ImageJ is as follows:

java.lang.NullPointerException
at loci.formats.in.KodakReader.readExtraMetadata(KodakReader.java:162)
at loci.formats.in.KodakReader.initFile(KodakReader.java:125)
at loci.formats.FormatReader.setId(FormatReader.java:1091)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:480)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:139)
at loci.plugins.in.Importer.run(Importer.java:77)
at loci.plugins.LociImporter.run(LociImporter.java:79)
at ij.IJ.runUserPlugIn(IJ.java:183)
at ij.IJ.runPlugIn(IJ.java:150)
at ij.Executer.runCommand(Executer.java:127)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:619)

Any help would be gratefully received.


Would you be willing to send the file that causes this error? If so, and if you need somewhere to which to upload the file, please let me know and I will send you our SFTP server information in a private message.

Regards,
-Melissa
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mlinkert
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Joined: Fri May 29, 2009 2:12 pm
Location: Southwest Wisconsin


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