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Unable to open Kodak .bip file

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Unable to open Kodak .bip file

Postby mobtgmjb » Fri May 11, 2012 11:03 pm

I hope someone can help. I'm trying to open a kodak .bip file without much luck. I have read the previous post from "jeeep" and have managed to download and open jeeep's .bip file. I guess my file is a slightly different format. The error being reported by ImageJ is as follows:

java.lang.NullPointerException
at loci.formats.in.KodakReader.readExtraMetadata(KodakReader.java:162)
at loci.formats.in.KodakReader.initFile(KodakReader.java:125)
at loci.formats.FormatReader.setId(FormatReader.java:1091)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:480)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:139)
at loci.plugins.in.Importer.run(Importer.java:77)
at loci.plugins.LociImporter.run(LociImporter.java:79)
at ij.IJ.runUserPlugIn(IJ.java:183)
at ij.IJ.runPlugIn(IJ.java:150)
at ij.Executer.runCommand(Executer.java:127)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:619)

Any help would be gratefully received.
mobtgmjb
 
Posts: 1
Joined: Fri May 11, 2012 10:52 pm

Re: Unable to open Kodak .bip file

Postby mlinkert » Sun May 13, 2012 11:15 pm

Hi,


I hope someone can help. I'm trying to open a kodak .bip file without much luck. I have read the previous post from "jeeep" and have managed to download and open jeeep's .bip file. I guess my file is a slightly different format. The error being reported by ImageJ is as follows:

java.lang.NullPointerException
at loci.formats.in.KodakReader.readExtraMetadata(KodakReader.java:162)
at loci.formats.in.KodakReader.initFile(KodakReader.java:125)
at loci.formats.FormatReader.setId(FormatReader.java:1091)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:480)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:139)
at loci.plugins.in.Importer.run(Importer.java:77)
at loci.plugins.LociImporter.run(LociImporter.java:79)
at ij.IJ.runUserPlugIn(IJ.java:183)
at ij.IJ.runPlugIn(IJ.java:150)
at ij.Executer.runCommand(Executer.java:127)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:619)

Any help would be gratefully received.


Would you be willing to send the file that causes this error? If so, and if you need somewhere to which to upload the file, please let me know and I will send you our SFTP server information in a private message.

Regards,
-Melissa
User avatar
mlinkert
Team Member
 
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Location: Southwest Wisconsin


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