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probleme execution omero.insight

PostPosted: Tue May 29, 2012 12:45 pm
by chettia02
when I execute Omero.insight to open in my server I find this file hs_err_pid 4984.log
but in other machines it runs normal

#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x745f1e80, pid=2716, tid=4384
#
# JRE version: 7.0_04-b22
# Java VM: Java HotSpot(TM) Client VM (23.0-b21 mixed mode, sharing windows-x86 )
# Problematic frame:
# C [MSVCR100.dll+0x1e80] memcpy+0x0
#
# Core dump written. Default location: C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\hs_err_pid2716.mdmp
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
#

--------------- T H R E A D ---------------

Current thread (0x04d84000): JavaThread "Initializer" [_thread_in_vm, id=4384, stack(0x04cb0000,0x04d00000)]

siginfo: ExceptionCode=0xc0000005, ExceptionInformation=0x00000008 0x745f1e80

Registers:
EAX=0x04cfde70, EBX=0x04cfde70, ECX=0x00000000, EDX=0x154bbf74
ESP=0x04cfde14, EBP=0x04cfde3c, ESI=0x04d84000, EDI=0x00000000
EIP=0x745f1e80, EFLAGS=0x00010246

Top of Stack: (sp=0x04cfde14)
0x04cfde14: 7434c0e3 04cfde70 154bbf74 00000035
0x04cfde24: 00000035 04d84128 04d84000 00000000
0x04cfde34: 04cfde48 7434897d 04cfe278 74211ae7
0x04cfde44: 04d84000 04cfe298 00000000 00000035
0x04cfde54: 04cfde70 04d84000 04cfe2a0 00000000
0x04cfde64: 04cfe298 047f1820 00000000 2f67726f
0x04cfde74: 63617061 6c2f6568 6a34676f 6e6f632f
0x04cfde84: 2f676966 706f7250 79747265 74746553

Instructions: (pc=0x745f1e80)
0x745f1e60: 72 72 6f 72 00 90 90 90 90 90 90 90 90 90 90 90
0x745f1e70: 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90
0x745f1e80: 55 8b ec 57 56 8b 75 0c 8b 4d 10 8b 7d 08 8b c1
0x745f1e90: 8b d1 03 c6 3b fe 76 08 3b f8 0f 82 a0 01 00 00


Register to memory mapping:

EAX=0x04cfde70 is pointing into the stack for thread: 0x04d84000
EBX=0x04cfde70 is pointing into the stack for thread: 0x04d84000
ECX=0x00000000 is an unknown value
EDX=
[error occurred during error reporting (printing register info), id 0xc0000005]

Stack: [0x04cb0000,0x04d00000], sp=0x04cfde14, free space=311k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [MSVCR100.dll+0x1e80] memcpy+0x0
C [zip.dll+0x1ae7] Java_java_util_zip_ZipFile_getEntry+0x7f
J java.util.zip.ZipFile.getEntry(J[BZ)J
J java.util.zip.ZipFile.getEntry(Ljava/lang/String;)Ljava/util/zip/ZipEntry;
j java.net.URLClassLoader$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
V [jvm.dll+0x1296da]
V [jvm.dll+0x1d837e]
V [jvm.dll+0x12975d]
V [jvm.dll+0xd914a]
C [java.dll+0x1061] Java_java_security_AccessController_doPrivileged__Ljava_security_PrivilegedExceptionAction_2Ljava_security_AccessControlContext_2+0x17
j java.net.URLClassLoader.findClass(Ljava/lang/String;)Ljava/lang/Class;+13
j java.lang.ClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+70
j sun.misc.Launcher$AppClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+36
j java.lang.ClassLoader.loadClass(Ljava/lang/String;)Ljava/lang/Class;+3
v ~StubRoutines::call_stub
V [jvm.dll+0x1296da]
V [jvm.dll+0x1d837e]
V [jvm.dll+0x1298c3]
V [jvm.dll+0x12999f]
V [jvm.dll+0x2c055]
V [jvm.dll+0x2d1b8]
V [jvm.dll+0x2d87b]
V [jvm.dll+0x2d8ca]
V [jvm.dll+0xcfc65]
V [jvm.dll+0xd11fb]
C [verify.dll+0x15cd]
C [verify.dll+0x1d53]
C [verify.dll+0x2c67]
C [verify.dll+0x4bee]
C [verify.dll+0x4f32] VerifyClassForMajorVersion+0x2b2

Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
J java.util.zip.ZipFile.getEntry(J[BZ)J
J java.util.zip.ZipFile.getEntry(Ljava/lang/String;)Ljava/util/zip/ZipEntry;
J java.util.jar.JarFile.getEntry(Ljava/lang/String;)Ljava/util/zip/ZipEntry;
J sun.misc.URLClassPath$JarLoader.getResource(Ljava/lang/String;Z)Lsun/misc/Resource;
J sun.misc.URLClassPath.getResource(Ljava/lang/String;Z)Lsun/misc/Resource;
j java.net.URLClassLoader$1.run()Ljava/lang/Class;+26
j java.net.URLClassLoader$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedExceptionAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.net.URLClassLoader.findClass(Ljava/lang/String;)Ljava/lang/Class;+13
j java.lang.ClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+70
j sun.misc.Launcher$AppClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+36
j java.lang.ClassLoader.loadClass(Ljava/lang/String;)Ljava/lang/Class;+3
v ~StubRoutines::call_stub
j org.apache.log4j.PropertyConfigurator.parseAppender(Ljava/util/Properties;Ljava/lang/String;)Lorg/apache/log4j/Appender;+266
j org.apache.log4j.PropertyConfigurator.parseCategory(Ljava/util/Properties;Lorg/apache/log4j/Logger;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)V+280
j org.apache.log4j.PropertyConfigurator.configureRootCategory(Ljava/util/Properties;Lorg/apache/log4j/spi/LoggerRepository;)V+63
j org.apache.log4j.PropertyConfigurator.doConfigure(Ljava/util/Properties;Lorg/apache/log4j/spi/LoggerRepository;)V+101
j org.apache.log4j.PropertyConfigurator.doConfigure(Ljava/net/URL;Lorg/apache/log4j/spi/LoggerRepository;)V+103
j org.apache.log4j.helpers.OptionConverter.selectAndConfigure(Ljava/net/URL;Ljava/lang/String;Lorg/apache/log4j/spi/LoggerRepository;)V+129
j org.apache.log4j.LogManager.<clinit>()V+156
v ~StubRoutines::call_stub
j org.apache.log4j.PropertyConfigurator.configure(Ljava/util/Properties;)V+8
j org.openmicroscopy.shoola.env.log.LoggerImpl.<init>(Ljava/util/Properties;Ljava/lang/String;)V+13
j org.openmicroscopy.shoola.env.log.LoggerFactory.makeNew(Lorg/openmicroscopy/shoola/env/Container;)Lorg/openmicroscopy/shoola/env/log/Logger;+286
j org.openmicroscopy.shoola.env.init.LoggerInit.execute()V+12
j org.openmicroscopy.shoola.env.init.Initializer.doInit()V+44
j org.openmicroscopy.shoola.env.Container.runStartupProcedure(Ljava/lang/String;Ljava/lang/String;)V+33
j org.openmicroscopy.shoola.env.Container.access$000(Ljava/lang/String;Ljava/lang/String;)V+2
j org.openmicroscopy.shoola.env.Container$1.run()V+8
j java.lang.Thread.run()V+11
v ~StubRoutines::call_stub

--------------- P R O C E S S ---------------

Java Threads: ( => current thread )
0x04f98c00 JavaThread "TimerQueue" daemon [_thread_blocked, id=5040, stack(0x057d0000,0x05820000)]
0x04f50800 JavaThread "AWT-EventQueue-0" [_thread_in_native, id=5064, stack(0x05740000,0x05790000)]
0x04998c00 JavaThread "Image Fetcher 0" daemon [_thread_blocked, id=540, stack(0x053e0000,0x05430000)]
0x04997400 JavaThread "AWT-Windows" daemon [_thread_in_native, id=1956, stack(0x05350000,0x053a0000)]
0x04de5c00 JavaThread "AWT-Shutdown" [_thread_blocked, id=3452, stack(0x052c0000,0x05310000)]
0x04dd9800 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=4276, stack(0x05230000,0x05280000)]
=>0x04d84000 JavaThread "Initializer" [_thread_in_vm, id=4384, stack(0x04cb0000,0x04d00000)]
0x047ac000 JavaThread "Service Thread" daemon [_thread_blocked, id=832, stack(0x04b90000,0x04be0000)]
0x0053dc00 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=2068, stack(0x04b00000,0x04b50000)]
0x0053c800 JavaThread "Attach Listener" daemon [_thread_blocked, id=3184, stack(0x04a70000,0x04ac0000)]
0x00539c00 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=1880, stack(0x049e0000,0x04a30000)]
0x00530000 JavaThread "Finalizer" daemon [_thread_blocked, id=3700, stack(0x04750000,0x047a0000)]
0x0052b400 JavaThread "Reference Handler" daemon [_thread_blocked, id=4600, stack(0x046c0000,0x04710000)]
0x0204f800 JavaThread "main" [_thread_blocked, id=768, stack(0x00090000,0x000e0000)]

Other Threads:
0x00529800 VMThread [stack: 0x01e30000,0x01e80000] [id=3424]
0x047bdc00 WatcherThread [stack: 0x04c20000,0x04c70000] [id=5048]

VM state:not at safepoint (normal execution)

VM Mutex/Monitor currently owned by a thread: None

Heap
def new generation total 78656K, used 20996K [0x140c0000, 0x19610000, 0x1eb60000)
eden space 69952K, 30% used [0x140c0000, 0x15541218, 0x18510000)
from space 8704K, 0% used [0x18510000, 0x18510000, 0x18d90000)
to space 8704K, 0% used [0x18d90000, 0x18d90000, 0x19610000)
tenured generation total 174784K, used 0K [0x1eb60000, 0x29610000, 0x340c0000)
the space 174784K, 0% used [0x1eb60000, 0x1eb60000, 0x1eb60200, 0x29610000)
compacting perm gen total 12288K, used 2133K [0x340c0000, 0x34cc0000, 0x380c0000)
the space 12288K, 17% used [0x340c0000, 0x342d5450, 0x342d5600, 0x34cc0000)
ro space 10240K, 42% used [0x380c0000, 0x384fe578, 0x384fe600, 0x38ac0000)
rw space 12288K, 54% used [0x38ac0000, 0x3913f0e8, 0x3913f200, 0x396c0000)

Code Cache [0x02610000, 0x02730000, 0x04610000)
total_blobs=451 nmethods=243 adapters=143 free_code_cache=31629Kb largest_free_block=32388544

Compilation events (10 events):
Event: 0.745 Thread 0x0053dc00 227 java.util.HashSet::add (20 bytes)
Event: 0.745 Thread 0x0053dc00 nmethod 227 0x02728788 code [0x02728890, 0x0272893c]
Event: 0.745 Thread 0x0053dc00 228 java.lang.Integer::hashCode (5 bytes)
Event: 0.745 Thread 0x0053dc00 nmethod 228 0x02728988 code [0x02728a80, 0x02728b00]
Event: 0.747 Thread 0x0053dc00 229 java.util.BitSet::get (69 bytes)
Event: 0.747 Thread 0x0053dc00 nmethod 229 0x02728b48 code [0x02728c90, 0x02728fbc]
Event: 0.749 Thread 0x0053dc00 230 java.nio.Buffer::checkIndex (22 bytes)
Event: 0.749 Thread 0x0053dc00 nmethod 230 0x02729248 code [0x02729350, 0x0272944c]
Event: 0.749 Thread 0x0053dc00 231 java.nio.DirectLongBufferU::ix (10 bytes)
Event: 0.749 Thread 0x0053dc00 nmethod 231 0x02729508 code [0x02729600, 0x02729690]

GC Heap History (0 events):
No events

Deoptimization events (0 events):
No events

Internal exceptions (10 events):
Event: 0.747 Thread 0x04d84000 Threw 0x154721d8 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.748 Thread 0x04d84000 Threw 0x15479ae0 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.750 Thread 0x04d84000 Threw 0x15481af0 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.751 Thread 0x04d84000 Threw 0x15488fe8 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.752 Thread 0x04d84000 Threw 0x15491570 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.752 Thread 0x04d84000 Threw 0x1549a158 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.753 Thread 0x04d84000 Threw 0x154a26e0 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.754 Thread 0x04d84000 Threw 0x154aa8e8 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.756 Thread 0x04d84000 Threw 0x154b1090 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.758 Thread 0x04d84000 Threw 0x154bb080 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166

Events (10 events):
Event: 0.754 loading class 0x04f9b0f8
Event: 0.754 loading class 0x04f9b0f8 done
Event: 0.756 loading class 0x04f9a638
Event: 0.756 loading class 0x04f9a638 done
Event: 0.757 loading class 0x04fb87c8
Event: 0.758 loading class 0x04fb87c8 done
Event: 0.758 loading class 0x397eb518
Event: 0.758 loading class 0x397eb518 done
Event: 0.758 loading class 0x04f7eed8
Event: 0.758 loading class 0x04f7eed8 done


Dynamic libraries:
0x00400000 - 0x00432000 C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\OMERO.insight.exe
0x772e0000 - 0x77460000 C:\Windows\SysWOW64\ntdll.dll
0x76bf0000 - 0x76d00000 C:\Windows\syswow64\kernel32.dll
0x76e90000 - 0x76ed6000 C:\Windows\syswow64\KERNELBASE.dll
0x74a50000 - 0x74a68000 C:\Windows\system32\tsappcmp.dll
0x76670000 - 0x7671c000 C:\Windows\syswow64\msvcrt.dll
0x76d60000 - 0x76e60000 C:\Windows\syswow64\USER32.dll
0x76440000 - 0x764d0000 C:\Windows\syswow64\GDI32.dll
0x76750000 - 0x7675a000 C:\Windows\syswow64\LPK.dll
0x76760000 - 0x767fd000 C:\Windows\syswow64\USP10.dll
0x763a0000 - 0x76440000 C:\Windows\syswow64\ADVAPI32.dll
0x76380000 - 0x76399000 C:\Windows\SysWOW64\sechost.dll
0x75550000 - 0x75640000 C:\Windows\syswow64\RPCRT4.dll
0x74e40000 - 0x74ea0000 C:\Windows\syswow64\SspiCli.dll
0x74e30000 - 0x74e3c000 C:\Windows\syswow64\CRYPTBASE.dll
0x76990000 - 0x76aec000 C:\Windows\syswow64\ole32.dll
0x76d00000 - 0x76d60000 C:\Windows\system32\IMM32.DLL
0x74ea0000 - 0x74f6c000 C:\Windows\syswow64\MSCTF.dll
0x746f0000 - 0x7488e000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_6.0.7601.17514_none_41e6975e2bd6f2b2\COMCTL32.DLL
0x75460000 - 0x754b7000 C:\Windows\syswow64\SHLWAPI.dll
0x75640000 - 0x7628a000 C:\Windows\syswow64\SHELL32.DLL
0x742a0000 - 0x745ea000 c:\program files (x86)\java\jre7\bin\client\jvm.dll
0x74b00000 - 0x74b07000 C:\Windows\system32\WSOCK32.dll
0x76340000 - 0x76375000 C:\Windows\syswow64\WS2_32.dll
0x75070000 - 0x75076000 C:\Windows\syswow64\NSI.dll
0x74260000 - 0x74292000 C:\Windows\system32\WINMM.dll
0x76af0000 - 0x76af5000 C:\Windows\syswow64\PSAPI.DLL
0x745f0000 - 0x746ae000 c:\program files (x86)\java\jre7\bin\MSVCR100.dll
0x748c0000 - 0x748cc000 c:\program files (x86)\java\jre7\bin\verify.dll
0x74230000 - 0x74250000 c:\program files (x86)\java\jre7\bin\java.dll
0x74210000 - 0x74223000 c:\program files (x86)\java\jre7\bin\zip.dll
0x74040000 - 0x74182000 C:\Program Files (x86)\Java\jre7\bin\awt.dll
0x75080000 - 0x7510f000 C:\Windows\syswow64\OLEAUT32.dll
0x73fd0000 - 0x73fe3000 C:\Windows\system32\DWMAPI.DLL
0x73fa0000 - 0x73fca000 C:\Program Files (x86)\Java\jre7\bin\fontmanager.dll
0x741e0000 - 0x741f4000 C:\Program Files (x86)\Java\jre7\bin\net.dll
0x74a80000 - 0x74abc000 C:\Windows\system32\mswsock.dll
0x749a0000 - 0x749a6000 C:\Windows\System32\wship6.dll
0x741d0000 - 0x741df000 C:\Program Files (x86)\Java\jre7\bin\nio.dll
0x73f60000 - 0x73f91000 C:\Program Files (x86)\Java\jre7\bin\t2k.dll
0x73e70000 - 0x73f5b000 C:\Windows\system32\DBGHELP.DLL

VM Arguments:
jvm_args: -Dexe4j.semaphoreName=c:_users_administrateur_desktop_omero.clients-beta4.3.3.win_omero.clients-beta4.3.3.win_omero.insight.exe0 -Dexe4j.moduleName=C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\OMERO.insight.exe -Dexe4j.tempDir=C:\Users\ADMINI~1\AppData\Local\Temp\e4jA304.tmp_dir24684 -Dexe4j.unextractedPosition=173893 -Dexe4j.consoleCodepage=cp0 -Xms256M -Xmx512M
java_command: <unknown>
Launcher Type: generic

Environment Variables:
PATH=C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\.\libs;C:\Python25\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Ice-3.3.1\bin;C:\Python25\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Ice-3.3.1\bin;c:\program files (x86)\java\jre7\bin
USERNAME=Administrateur
OS=Windows_NT
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 44 Stepping 2, GenuineIntel



--------------- S Y S T E M ---------------

OS: Windows NT 6.1 , 64 bit Build 7601 Service Pack 1

CPU:total 12 (16 cores per cpu, 2 threads per core) family 6 model 44 stepping 2, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, ht, tsc, tscinvbit, tscinv

Memory: 4k page, physical 16763992k(13535700k free), swap 33526140k(30582260k free)

vm_info: Java HotSpot(TM) Client VM (23.0-b21) for windows-x86 JRE (1.7.0_04-b22), built on May 3 2012 00:03:48 by "java_re" with unknown MS VC++:1600

time: Tue May 29 13:17:23 2012
elapsed time: 1 seconds





thnk you
chettia

Re: probleme execution omero.insight

PostPosted: Tue May 29, 2012 12:51 pm
by cxallan
The only real suggestion I can give you is to try installing a Java6 JVM and setting that as your default JVM.

Re: probleme execution omero.insight

PostPosted: Tue May 29, 2012 1:59 pm
by chettia02
thnak you it works now i installs java 6 JVM
thank you

Re: probleme execution omero.insight

PostPosted: Tue May 29, 2012 2:59 pm
by cxallan
chettia02 wrote:thnak you it works now i installs java 6 JVM
thank you


Great.

Re: probleme execution omero.insight

PostPosted: Tue May 29, 2012 3:09 pm
by chettia02
Omero now we want to use in my institute department so we want each department has username and password and each student in the department username and password is what steps
?????????????????????????
thank you
chettia

Re: probleme execution omero.insight

PostPosted: Tue May 29, 2012 3:10 pm
by cxallan
You'll have to create all those users and groups using OMERO.webadmin as explained via the movies on the features page:

http://www.openmicroscopy.org/site/prod ... ature-list

Re: probleme execution omero.insight

PostPosted: Wed May 30, 2012 8:54 am
by MLB
Hi,
To design groups : private, collaborative, collaborative read only in our plateform. I would like to move away misgivings.

Some questions :
    Is it possible to switch an image or a dataset, project to an other group ?

    Is it possible to change permission level :
      private to Collaborative only ?
      Collaborative only to Collaborative ?
      Collaborative only to private?
      Collaborative to Collaborative only?

    As I understand Omero Philosophy, it's better to have group as we have collaboration on the same subject. Right ?

    In a same group, all users have the same permission level. Right ?

Thank you for your help.
Marie Laure

Re: probleme execution omero.insight

PostPosted: Tue Jun 05, 2012 12:59 pm
by cxallan
MLB wrote:
    Is it possible to switch an image or a dataset, project to an other group ?


Not in OMERO 4.3.x but you will be able to in OMERO 4.4.0 which should be released soon.

MLB wrote:Is it possible to change permission level :
    private to Collaborative only ?


Yes.

MLB wrote:Collaborative only to Collaborative ?


No in OMERO 4.3.x. Yes in OMERO 4.4.0.

MLB wrote:Collaborative only to private?


No in OMERO 4.3.x. Yes in OMERO 4.4.0.

MLB wrote:Collaborative to Collaborative only?


No in OMERO 4.3.x. Yes in OMERO 4.4.0.

MLB wrote:As I understand Omero Philosophy, it's better to have group as we have collaboration on the same subject. Right ?


Correct.

MLB wrote:In a same group, all users have the same permission level. Right ?


No. The group leaders (optional owners of the group) have administrative privileges within the group. They can see and modify all data within the group.