Open Microscopy Environment

I was wondering if I have to manually update the ome schema, and if so how does one go about doing this. Thanks for any feedback because i am unable to use omero as i cannot upload any ome.tif files via importer.

Thanks
-Brandon

Hello Brandon,

Importing of all the ome-xml and ome.tiff files is handled by the version of Bio-Formats build into the importer.

Can you let me have some versions:

The version of OMERO.server
The version of OMERO.importer
And the version of the ome.tiff file - you can find this using the online validator:
http://validator.openmicroscopy.org.uk/

Thanks,

Andrew

Andrew,

The version of OMERO.server and OMERO.importer is Beta-4.2.0

Here is the validation results for my image.

Summary
Validated file: 2010-10-28-13-57-13_SerumAdded_Marker_1__1.ome.tif
File schema: http://www.openmicroscopy.org/Schemas/OME/2008-02 (Standard V2)
The file is valid.
The file is an OME-TIFF.
The file's xml could be parsed.
The file was not checked for internal consistency.
The OME-TIFF data appears consistent with the OME-TIFF metadata.
The file has custom attributes.
Error list
None

Warning list
Line Column Type Message
Info
File also valid under schema: February 2008 V1

Unresolved list
None

Thanks for the feedback.

I have also submitted the error via importer, and here is the link for my ticket if it will add anymore insight.
http://qa.openmicroscopy.org.uk/qa/feedback/2973/?token=73e314ec364a44b5edce58b8b1b3fff1

-Brandon

Hi Brandon,

I've replied to your QA message as well, but basically this issue is resolved in the latest 4.2.1 release (due out soon!). Thanks again for your error report!

Cheers,

Brian Loranger, Programmer
OMERO Team

Just wanted to thank everyone for the help, and the new update. I'm so excited that we are finally through the deployment stage and onto the usage portion.

-Brandon