Open Microscopy Environment

atarkowska wrote:Could you also tell which 404 we are talking about exactly? Is that omero.web grey page?

What is the output of

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curl -I https://omero.college-de-france.fr/omero

Ola

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Not Found

The requested URL /omero/webclient/login/ was not found on this server.

Apache/2.2.15 (CentOS) Server at omero.college-de-france.fr Port 443



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curl: (60) Peer certificate cannot be authenticated with known CA certificates
More details here: http://curl.haxx.se/docs/sslcerts.html

curl performs SSL certificate verification by default, using a "bundle"
of Certificate Authority (CA) public keys (CA certs). If the default
bundle file isn't adequate, you can specify an alternate file
using the --cacert option.
If this HTTPS server uses a certificate signed by a CA represented in
the bundle, the certificate verification probably failed due to a
problem with the certificate (it might be expired, or the name might
not match the domain name in the URL).
If you'd like to turn off curl's verification of the certificate, use
the -k (or --insecure) option.


phm wrote:Hi Kenneth,
these are files that you want.

atarkowska wrote:Philippe, I would like to poin that in http://www.openmicroscopy.org/community ... =40#p16404 you asked as about help to upgrade to OMERO 5.2 and you switched to use NGINX as you had issues with apache. If this has changed since Nov 2015 you should point it in the beggingin of your question that you changed webserver. My impresison is that you are still using NGINX as your omero confing and web config say so. I would recommand you to turn off apache and start nginx

For the future you may want to uninstall apache permanently!

Ola

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Traceback (most recent call last):
  File "./script", line 1716, in <module>
    runScript()
  File "./script", line 1703, in runScript
    fileAnnotation = export_figure(conn, scriptParams)
  File "./script", line 1660, in export_figure
    return figExport.buildFigure()
  File "./script", line 688, in buildFigure
    self.add_panels_to_page(panels_json, imageIds, page)
  File "./script", line 1343, in add_panels_to_page
    image, pilImg = self.drawPanel(panel, page, i)
  File "./script", line 1166, in drawPanel
    self.pasteImage(pilImg, imgName, panel, page, dpi)
  File "./script", line 1452, in pasteImage
    pilImg.save(imgName)
  File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/PIL/Image.py", line 1665, in save
    save_handler(self, fp, filename)
  File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/PIL/TiffImagePlugin.py", line 1320, in _save
    offset = ifd.save(fp)
  File "/opt/rh/python27/root/usr/lib64/python2.7/site-packages/PIL/TiffImagePlugin.py", line 608, in save
    if len(data) <= 4:
TypeError: object of type 'int' has no len()


atarkowska wrote:Philippe, Will originally pointed to insall Pillow 3.3.0 but this version may not be compativle with numpy. Please make sure you install 2.9, see https://trello.com/c/jZjPZf8K/637-attri ... te-tobytes

Please remember to follow viewtopic.php?f=4&t=8083&start=20#p17322

Ola

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pip install Pillow<3.0

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pip install "Pillow<3.0"

kennethgillen wrote:Using whichever method you found to install/uninstall inside the Python instance your OMERO is using..

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pip install Pillow<3.0

Cheers,

Kenny

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packages/PIL/TiffImagePlugin.py", line 608, in save
    if len(data) <= 4:
TypeError: object of type 'int' has no len()