Open Microscopy Environment

Hi Josh,

first of all, thank you very much for your reply.
it always helps me a lot.

I would like to upload image files into omero.web. But, I couldn't find any button that allows me to upload
image files for testing purpose.

Could you let me know the manual URL for usage of omero.web ?

also, do you know how I can access the omero.web server throughout omero.insight ?
I downloaded omero.insight on windos xp based desktop pc, and installed it.

but, when I tried to connect the web omero.web server (http://europa.cci.emory.edu:9999/ or http://europa.cci.emory.edu) throughout web.insight, I couldn't access it by using a root account.

do I need to download something else to access the server throughout other pc ?

Thanks,
Steve Oh

HI Steve,

Unfortunately the OMERO platform does not offer web based importer at this moment.
Have you already try to use OMERO.importer included in client package?

but, when I tried to connect the web omero.web server (http://europa.cci.emory.edu:9999/ or http://europa.cci.emory.edu) throughout web.insight, I couldn't access it by using a root account.

Could you exactly specify where did you put the url http://europa.cci.emory.edu:9999 in Insight?

At this moment there is no direct link from image browsed through Insight that open it on the web browser.

You can browse the same data through Insight or Web as the separate clients.

Thanks
Ola

Thanks for your reply.
I fixed connection problems.
The problem was that I installed different version of omero client..
I am supposed to install 4.2.2 version for omero.client.
Also, I changed port number from 9999 to 4064 and unchecked 'Lock icon' on the login page.
So, now I can access insight and importer.

But, one problem is that I couldn't upload .svs file correctly by using an importer application.
It generated following error message in the debug text menu (omero.importer)
Could you explain how I can enlarge memory heap size ? (or maximum image size)

Code: Select all

2011-04-13 11:37:39,158 456098     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2011-04-13 11:37:39,173 456113     [2-thread-1] ERROR    ome.formats.importer.gui.ImportHandler  - Generic error while importing image.
2011-04-13 11:37:39,173 456113     [2-thread-1] DEBUG      ome.formats.importer.gui.GuiImporter  - java.lang.OutOfMemoryError: Java heap space
at ome.formats.importer.ImportLibrary.writeDataPlanarBased(ImportLibrary.java:845)
at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:730)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:557)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376)
at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)


Thanks,
Steve Oh

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