solved this easily in the end by sitting down and looking at what was going on.
Global CLI and connection variables used for all the uploads using the same session fixed it.
My suggestion for documentation would be a clear simple python example of how to upload images as one user? Then maybe a more complicated one with multiple users that you have? This also should be more prominent in the docs as we had some collaborators who claimed the reason they didn't use omero is because they couldn't work out how to load images into it.
As Im now uploading 78,000 images I would like to turn off the output from the upload process to be one line per file at the moment it looks like this:
Imported pixels:
Other imported objects:
Fileset:9673
Image:9673
Using session b5a5abc4-327f-4b13-9d84-0b0532e1480c (root@ves-ebi-cf:4064). Idle timeout: 10.0 min. Current group: public_group
2014-11-14 16:52:16,560 188 [ main] INFO ome.formats.importer.ImportConfig - OMERO Version: 5.0.2-ice35-b26
2014-11-14 16:52:16,573 201 [ main] INFO ome.formats.importer.ImportConfig - Bioformats version: 5.0.2-ice35-b26 revision: 0c4215a date: 27 May 2014
2014-11-14 16:52:27,072 10700 [ main] ERROR ome.system.UpgradeCheck - Error reading from url:
http://upgrade.openmicroscopy.org.uk?ve ... ystems+Inc. "connect timed out"
9674
I tried many variations of the debug param including having it not set but to no avail this i thought would work:
import_args.extend(["-d", str(dsId),"--debug", "ERROR"])
How do i get rid of the UpgradeCheck connection error? I tried setting it to empty on the server but that didn't work?
bin/omero config set omero.upgrades.url
Any tips welcome - thanks!