Open Microscopy Environment

Hello,

We recently installed omero 5.0.5 in our institute and i was eager to try the omeoro.figure
omero.web application. So i followed the installation instructions gave on http://will-moore.github.io/figure/
and when i enter the command:
bin\omero config append omero.web.apps '"figure'", i get this message as an answer:
NoValueError: No JSON object could be decoded
So, i m not informatician and i have no idea of what it means, but i got it was in relation with java so i checked if there was any problem with it running a diagnostic and it says it s working.
If someone have an idea to fix my problem, let me know.

Best,

Alex.

Hi Alex,

I think your command should be:

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bin\omero config append omero.web.apps '"figure"'

the quotes are not closed correctly, basically you need:

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(single quote) (double quote) figure (double quote) (single quote)


Please double check documentation

Ola

Hi Ola,

Thx for your answer.
I took caution to write single quote double quote figure double single as you told me to but that was apparently not my mistake since i still get the same error message.

Alex.

Assuming you have no other apps installed, you could try setting the whole list as described for OMERO 4.4 (still supported in OMERO 5).

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bin\omero config set omero.web.apps '["figure"]'



If there's really some JSON parsing issue, then you'll get the same message, but it's worth trying.

Will

Hi Alex,

Could you show me an output of bin\omero config get ? Please wipe all passwords before you publish on the forum

Ola

Hi,

wmoore:

Assuming you have no other apps installed

You were right, no other apps installed, so i did as intructed and i dont get the JSON eror message.
But when i want to stop and restart omero.web, i get this error message (Invalid additional_apps JSON:" '[figure]' "; i note that the quote order is reversed, dunno why though ) and cannot connect to omero web.

Ola, i assume you only need the part concerning omero.web, if not let me know and i ll add the rest but it s a hassle since i cant copy paste from the cli.
here is the output for config get:

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omero.data.dir=E:\\Omero-data\\OMERO
omero.web.application_server=development
omero.web.debug=True
opmero.web.server_list=[["10.2.4.251", 4064, "prod"], ["10.2.4.251", 4064, "dev"]]


Output after the bin\omero config set omero.web.apps '["figure"]' command:

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omero.data.dir=E:\\Omero-data\\OMERO
omero.web.application_server=development
omero.web.apps='[figure]'
omero.web.debug=True
opmero.web.server_list=[["10.2.4.251", 4064, "prod"], ["10.2.4.251", 4064, "dev"]]


Thx for your answers,

Alex.

Ok, We have just noticed that you are using Windows, then your command will be:

bin\omero config append omero.web.apps "\"figure\""

On Windows please use the escape sequence \" for nesting double quotes

In your bin/omero config get you should see:

omero.web.apps=["figure"]

Ola

Well, it s working!
Thx you so much guys.
I'm sorry i did not precise i was on windows from the begining

Best,

Alex.

Great. I'll update the figure install docs to add the reminder to escape for Windows users.

Any other feedback you have on OMERO.figure is also always welcome!

Thanks,

Will.