Re: Ice Memory Limit Exception
Posted:
Mon Aug 11, 2014 1:28 amby ebbwdan
Hi Josh,
Just wanted to let you know I sent a private message with links to my repo.
Cheers,
Dan.
Re: Ice Memory Limit Exception
Posted:
Mon Aug 11, 2014 8:58 amby wmoore
Hi Dan,
Unfortunately Josh is on holiday for the next few weeks. If you could send me what you sent him, I can try to help or pass them to an appropriate team member.
Thanks,
Will.
Re: Ice Memory Limit Exception
Posted:
Tue Aug 19, 2014 12:55 pmby wmoore
Hi Dan,
I opened a PR on your script:
https://github.com/ebbwdan/omero_scripts/pull/1 which makes it run a little quicker.
I'll look at how we can make this a little nicer without hard coding the sequence of tiles and discuss with Josh when he's back.
Simply creating the image and calling setTile() to populate all the pixel data is still a little slow, so I'll ask him if there's any potential speedups there.
Hope that helps a bit,
Will.
Re: Ice Memory Limit Exception
Posted:
Wed Aug 20, 2014 11:14 pmby ebbwdan
Hi Will,
Many thanks for your help, much appreciated!
This approach is similar to what I tried a while ago in my original mod of 'createImageFromNumpySeq' but at that time I had trouble getting setTile() to work. At least I have a better understanding of getting and setting data now. Anyway, I'll give it a bash.
Cheers,
Dan.