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Omero with scanR

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Omero with scanR

Postby NUser » Mon Mar 01, 2010 10:30 am

Hello again,
I want to use omero with scanR data sheets, but I don't know if this really works.

The scanR data sheets include different .tif pictures. For example with different dues. (Cy3, DAPI,FITC)
This pictures should be overlap, so that I get one picture with different colours. (This information are in the .dat and .xml files)
But when I import the scanR data files I get only 3 single pictures, not a overlap picture.
My question is, if it's generally possible to get one overlap picture from three .tif pictures from a scanR data sheet and when how it works.
Because I have seen on the main page, that the scanR function isn't works optimally.

The second thing is, that I have some further information to my pictures in a excel file. Something about in which well was the picture made and so on.
How can I attach this information or this excel file to my pictures?

Kind regards
Nadine
NUser
 
Posts: 18
Joined: Wed Feb 03, 2010 11:38 am

Re: Omero with scanR

Postby cxallan » Mon Mar 01, 2010 12:30 pm

If you'd can send us some of the problematic data we'd be happy to look at it.
cxallan
Site Admin
 
Posts: 509
Joined: Fri May 01, 2009 8:07 am

Re: Omero with scanR

Postby NUser » Wed Mar 03, 2010 8:31 am

I have send the data to ome-users-owner@lists.openmicroscopy.org.uk
(2 Mails)

I hope you can do something with it.

Kind regards
Nadine
NUser
 
Posts: 18
Joined: Wed Feb 03, 2010 11:38 am


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