Open data, advanced imaging data applications, and more
The Public Resources day will explore several repositories providing access to published reference datasets composed of (but not limited to) images.
This schedule is subject to change and will be updated periodically.
The schedule will include pre-recorded videos organised by topic followed by group discussions.
The content will repeated over two sessions to accomodate our
community across timezones.
All times are in UK - British Summer Time (UTC+1). Click on the
times to the left of each event for your timezone.
Please find time to watch the videos before the corresponding discussion on each topic.
Invited Talks (5 videos, playlist length: 57min)
Flash Talks (4 videos, playlist length: 10min)
This session is aimed at our community attending from Oceania, Asia, Europe or Africa.
Workshop and round-table
Introduction to the IDR ecosystem will be shown on concrete examples of IDR studies. Images and metadata mining and comparison workflows will be presented. The first, hands-on section will show the cross-studies searches using OMERO.web. The second section will expand on these possiblities showing complex metadata mining and plotting as well as image reanalysis in Jupyter notebooks.
Jean-Marie Burel, University of Dundee
Petr Walczysko, University of Dundee
Continued discussion on Public Resources topics.
Sébastien Besson, University of Dundee
Including IDR submission, IDR analysis and Public Resources round-table
Submitting data.
Frances Wong, University of Dundee
Running analysis against IDR data.
Jean-Marie Burel, University of Dundee
Continued discussion on Public Resources topics.
Sébastien Besson, University of Dundee
Introductions to Global BioImaging and its activities.
Antje Keppler, Euro-BioImaging ERIC
This session is aimed at our community attending from Europe, Africa or America.
Workshop and round-table
Introduction to the IDR ecosystem will be shown on concrete examples of IDR studies. Images and metadata mining and comparison workflows will be presented. The first, hands-on section will show the cross-studies searches using OMERO.web. The second section will expand on these possiblities showing complex metadata mining and plotting as well as image reanalysis in Jupyter notebooks.
Jean-Marie Burel, University of Dundee
Petr Walczysko, University of Dundee
Continued discussion on Public Resources topics.
Sébastien Besson, University of Dundee
Including IDR submission, IDR analysis and Public Resources round-table
Submitting data.
Frances Wong, University of Dundee
Running analysis against IDR data.
Jean-Marie Burel, University of Dundee
Continued discussion on Public Resources topics.
Sébastien Besson, University of Dundee
Introductions to Global BioImaging and its activities.
Antje Keppler, Euro-BioImaging ERIC
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Version: 2024.04.18