How To Guides

This section contains various guides and resources showing how to perform specific tasks in OME and OMERO software.

OME and OMERO Movies

We've produced a series of screencast movies that describe various OME resources and demonstrate installation and use of the OMERO software suite. These cover the OME and OME-XML, the OMERO Server, the OMERO clients (.importer and .insight) and the OMERO Webadmin administration tool. Please let us know if you need any more information at the OMERO Wiki or by using the OME Mailing lists.

Screencast Movie	Lo-res Version (720x540)	Hi-res Version (1024x768)
OME and OMERO Resources	Download (47MB)	Download (48MB)
OME Data Model and OME-XML	Download (32MB)	Download (35MB)
OMERO.server Installation	Download (37MB)	Download (44MB)
OMERO.webadmin	Download (20MB)	Download (30MB)
OMERO.importer Client	Download (32MB)	Download (39MB)
OMERO.insight Client	DataManager (14MB) Viewer (14MB) Hierarchy manager (10MB) Measurement Tool (32MB)	DataManager (20MB) Viewer (19MB) Hierarchy manager (14MB) Measurement Tool (46MB)

All movies are QuickTime format (H.264). QuickTime player can be downloaded from Apple.

OME Perl Server Docs

• OS X Installation Guide: A guide for installing OME Perl Server on Mac OS X using the graphical installation wizard.
• FindSpots User Guide: A guide for using OME's FindSpots - automated 3D particle finding and tracking software.
• Tutorial: Quantitative MATLAB image analysis in OME: This is a step-by-step walkthrough explaining how to convert a legacy image analysis algorithm implemented in MATLAB into an analysis module so that it can be executed by the OME analysis engine against images and meta-data stored in OME.
• Image Table Tools can be used to develop table-based displays of annotated images. These displays are suitable for dissemination of supplemental data for publications involving large microscopy image sets. The manual describes the use, configuration and implementation of these tools.