Remote: Mark, Josh, Seb, June, Simon, Wilma, Melissa, Kenny, J-m,
Chris, Will, David, Riad, Emil
Start: 2:00 pm
(2-3 minutes each)
5.4.8 release (Josh)
thumb in web.
Chris: read-only group often used for publishing. E.g. IDR.
Some existing issues in 5.4.7.
New edge-case bug may not be a blocker.
Need to review in more depth after.
Riad: seems I have a fix for current bug.
Neubias: Focus on Matlab. PRs open. Testing volunteers?
Don’t know which version will be used at Neubias
Our ci uses older version - doesn’t support latest
IDR training changed
FileFormats - czi diverse formats
File formats: LIF is joining ND2
Visualization uses cases (see #hca channel for summary)
Asked for analyzed data (spots, ROIs etc).
Do we use ROI folders? Masks, annotations etc?
Data_repo filled-up squig.
has resolved this.
for CPU, RAM, etc, and Check_MK (local check) script now on Kubernetes master to check “Ready” status of all 3 nodes.
critical issues in OME
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)
Upcoming efforts: Data-In & Data-Out (Seb)
Responsibilities: IDR datasets + ROIs, HCA datasets + ROIs
biotracks, Bio-Formats 6, S3Reader
(e.g. Knime) Matlab, visualization
Technologies: apps, microservices, downloader
Seb: Data-in includes images, metadata, rois, etc
Slides upcoming on each of the fronts for general clarity
Josh: matches what was discussed during OSARs:
J-m: also matches what we’ve been doing in the training sessions
Reporting back over the next week? (despite getting 5.4.8 out)