Analyze with OMERO


Analyze your data in OMERO


Analysis apps can access images on OMERO and save results back to the server.

OMERO.scripts run on the server itself and can be launched from the clients.


OMERO feature

Attaching analytical results

Support for storing analytical results attached to images.

View user guide
OMERO feature

Draw ROIs

Draw ROIs across multiple dimensions and measure pixel intensity.

View Insight user guide Watch OMERO.iviewer movie
OMERO feature

ImageJ/Fiji plugin

Import images and save ROIs, overlays and analysis results from ImageJ/Fiji into OMERO.

View user guide View movie
OMERO feature

Scripting service

Write scripts to add functionality to OMERO.server and share them with the community.

View developer guide View movie
OMERO feature

OMERO.matlab toolbox

Work with your OMERO data in MATLAB using a plugin.

View developer guide View movie
OMERO feature

OMERO.mtools

An optional suite of MATLAB-based image analysis tools.

View user guide View movie
OMERO feature

R and OMERO

Connect to OMERO in R using rJava and the OMERO Java Gateway.

Check out the code repo View movie
OMERO feature

Python Blitz API

An easy-to-use API for OMERO making it easier to work with your data in Python.

View developer guide
OMERO feature

Tabular Data support

HDF-based storage of measurement results with an API for exporting to Excel using OMERO.tables.

View developer guide

Add functionality to your OMERO installation with community-developed optional apps and plugins


OMERO feature

Orbit Image Analysis

Whole Slide Image analysis that connects to OMERO.

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OMERO feature

OMERO-WND-CHARM

Scripts for using WND-CHARM, an image classifier, on images stored in OMERO.

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OMERO feature

KNIME-OMERO integration

Start OMERO.insight directly within KNIME for image processing.

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Get started working with your images now

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