OMERO for scientists


OMERO is designed with scientists in mind


OMERO for Scientists

OMERO handles all your images using a secure central repository, from the microscope to publication.

Using the power of Bio-Formats, OMERO supports over 140 image file formats, including all major microscope formats.


Import Data

Upload your data via the desktop app or command line, use our custom dropbox tool, or have your facility manager import it for you

Organize

View and organize your data from anywhere you have internet access

View

Work with your images using the OMERO.insight desktop app, with OMERO.web in your browser, or from 3rd party software

Analyze

Use ImageJ, MATLAB, R, scripts and other tools to run analysis on data in OMERO and save results on the server

Share

Share data with collaborators or your PI via URLs

Publish

Publish direct from the server via a customized website or embedded viewer


Key Features

Some of OMERO’s key features for scientific workflows are highlighted below.


OMERO feature

Import Data

Import over 140 image formats from microscope, graphics and other imaging formats, using the OMERO.insight app.

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OMERO feature

View Data

Use OMERO.insight and OMERO.web to work with image data over the internet from anywhere. Browse thumbnails, image previews and view in full viewer including 'split-channel' view and Z-projection.

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OMERO feature

Set and Adjust Rendering

Rendering settings, including colours and intensity ranges can be adjusted and saved for any image. In appropriate groups, other group members can save their own settings for shared images.

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OMERO feature

Create ROIs

The Measurement Tool in OMERO.insight is used to draw Regions of Interest (ROIs) and enable some basic analysis to be performed.

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OMERO feature

Add Metadata

Add tags, key-value pairs, comments, ratings or file attachments to single or multiple images or containers. Search sort or interact with data based on these annotations.

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OMERO feature

Draw Figures

Use OMERO.figure to draw figures quickly and easily for publications, presentations and meetings, save them on the OMERO server, and export as vector graphics.

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OMERO feature

Collaborate

OMERO Groups enable sharing of data, annotations and figures within groups of scientists. Browse multiple groups and move data between them. Group owners have extra capabilities.

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OMERO feature
OMERO feature

Use with ImageJ/Fiji

The OMERO ImageJ plugin enables images on OMERO to be opened directly in ImageJ/Fiji. Save ROIs and overlays, results, new images or modified images from ImageJ into OMERO.

View User Guide


Get started working with your images now

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