Open Microscopy Environment

Hi All,

I am having with some ND2 files from a capture of a 96 well plate on a Nikon Confocal. I am running the latest versions of Fiji, LOCI and Java but keep getting exception errors like those below.

You can download an example file from here

https://dl.dropboxusercontent.com/u/111 ... %20ND2.nd2

Any ideas?


Cheers

Cam


(Fiji Is Just) ImageJ 1.47q; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 20MB of 12177MB (<1%)

java.lang.ArithmeticException: / by zero
at loci.formats.FormatTools.rasterToPosition(FormatTools.java:529)
at loci.formats.FormatTools.rasterToPosition(FormatTools.java:514)
at loci.formats.in.NativeND2Reader.initFile(NativeND2Reader.java:1110)
at loci.formats.FormatReader.setId(FormatReader.java:1183)
at loci.formats.DelegateReader.setId(DelegateReader.java:259)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)
at loci.plugins.in.Importer.showDialogs(Importer.java:141)
at loci.plugins.in.Importer.run(Importer.java:79)
at loci.plugins.LociImporter.run(LociImporter.java:81)
at ij.IJ.runUserPlugIn(IJ.java:194)
at ij.IJ.runPlugIn(IJ.java:160)
at ij.IJ.runPlugIn(IJ.java:149)
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:421)
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:57)
at ij.IJ.runUserPlugIn(IJ.java:194)
at ij.IJ.runPlugIn(IJ.java:160)
at ij.IJ.runPlugIn(IJ.java:149)
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:435)
at ij.io.Opener.openImage(Opener.java:307)
at ij.io.Opener.openImage(Opener.java:330)
at ij.io.Opener.open(Opener.java:143)
at ij.io.Opener.openAndAddToRecent(Opener.java:243)
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
at java.lang.Thread.run(Thread.java:662)

Hi,

Many thanks for reporting this and providing the image file. I've been able to reproduce the problem you reported using the file you provided with the latest version of Bio-Formats. I've opened a ticket for this here: http://trac.openmicroscopy.org.uk/ome/ticket/10939, and you will be copied on any changes made to it.


Regards,
Roger Leigh