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Donation of info to Bio-Formats: Bio-Rad Gel 1sc file format

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Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Donation of info to Bio-Formats: Bio-Rad Gel 1sc file format

Postby itsayellow » Mon Sep 11, 2017 9:01 pm

Hi all,

I've been working on a project for a colleague who wants support for *.1sc files created by Bio-Rad Quanitity one software. Bio-Formats calls these "Bio-Rad Gel 1sc file format"

I was very happy to find the Bio-Formats code and get a start understanding the file format. Thanks!
I think I've learned a lot more since my start, and wanted to donate back what I've learned.

I made a Markdown description of what I currently know about the 1sc file format:
https://github.com/itsayellow/biorad1sc ... sc_spec.md

I also am in the process of assembling a python package to read in 1sc files at the repository:
https://github.com/itsayellow/biorad1sc_reader

In that repository is a python3 command-line script called read1sc.py which creates detailed reports (txt files) on any given *.1sc file that is given to it as an argument:
https://github.com/itsayellow/biorad1sc ... read1sc.py

These are still in progress, but are functional right now.

Let me know if you have any questions or anything to add: itsayellow+dev@gmail.com

thanks,
Matt
itsayellow
 
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Re: Donation of info to Bio-Formats: Bio-Rad Gel 1sc file fo

Postby itsayellow » Mon Sep 11, 2017 10:48 pm

FYI, the python package is live on pypi for python3. To install it, use:
Code: Select all
pip3 install biorad1sc_reader
itsayellow
 
Posts: 2
Joined: Sun Sep 10, 2017 11:22 pm

Re: Donation of info to Bio-Formats: Bio-Rad Gel 1sc file fo

Postby sbesson » Wed Sep 13, 2017 6:26 am

Hi Matt,

thanks for sharing the results of your format investigation with the community. We'll make sure we promote these links for anyone interested.

Best,
Sébastien
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sbesson
Team Member
 
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Joined: Tue Feb 28, 2012 7:20 pm


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