Open Microscopy Environment

Thanks so the last command should add the ISQReader JAR to the command-line classpath. It still failed because by default, it still uses the internal ImageReader (which does not include your reader). Now, let's try to add the -format option suggested by David allowing to force your new ISQReader to be used instead:

Code: Select all

BF_CP=/Users/Hedwall/bioformats/tools/ISQReader.jar /Users/Hedwall/bioformats/tools/showinf -format ISQ -nopix /Users/Hedwall/Desktop/C0003094.ISQ | grep initializing


Sebastien

Got it to work! Thanks!!

Now only some code header errors but at least I can now use showinf

// Albin

Glad to hear it,

as a follow-up of this discussion, I have also opened a Pull Request to cover the usage of these options in the technical documentation of the Bio-Formats command-line utilities.

Best,
Sebastien