Open Microscopy Environment

Code: Select all

bin/omero login root@localhost


omero@ip-172-31-18-162:~/OMERO.server/bin$ ./omero admin diagnostics | more

================================================================================
OMERO Diagnostics 5.2.6-ice35-b35
================================================================================

Commands: java -version 1.8.0 (/usr/bin/java)
Commands: python -V 2.7.6 (/usr/bin/python)
Commands: icegridnode --version 3.5.1 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.5.1 (/usr/bin/icegridadmin)
Commands: psql --version 9.4.10 (/usr/bin/psql)

Server: icegridnode running
Server: Blitz-0 active (pid = 3282, enabled)
Server: DropBox active (pid = 3294, enabled)
Server: FileServer active (pid = 3302, enabled)
Server: Indexer-0 active (pid = 3297, enabled)
Server: MonitorServer active (pid = 3307, enabled)
Server: OMERO.Glacier2 active (pid = 3315, enabled)
Server: OMERO.IceStorm active (pid = 3304, enabled)
Server: PixelData-0 active (pid = 3306, enabled)
Server: Processor-0 active (pid = 3299, enabled)
Server: Tables-0 active (pid = 3308, enabled)
Server: TestDropBox inactive (enabled)

Log dir: /home/omero/OMERO.server-5.2.6-ice35-b35/var/log exists
Log files: Blitz-0.log 1.0 MB errors=37 warnings=1

Log files: DropBox.log 9.0 KB errors=6 warnings=4

Log files: FileServer.log 1.0 KB
Log files: Indexer-0.log 10.0 KB errors=0 warnings=4

Log files: MonitorServer.log 3.0 KB
Log files: OMEROweb.lock 0.0 KB
Log files: OMEROweb.log 1.0 KB errors=0 warnings=5

Log files: OMEROweb_brokenrequest.lock 0.0 KB
Log files: OMEROweb_brokenrequest.log 0.0 KB
Log files: PixelData-0.log 12.0 KB
Log files: Processor-0.log 151.0 KB errors=50 warnings=11

Log files: Tables-0.log 126.0 KB errors=64 warnings=32

Log files: TestDropBox.log n/a
Log files: master.err 3.0 KB errors=6 warnings=11

Log files: master.out 1.0 KB errors=5 warnings=0

Log files: Total size 1.87 MB


Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:OMERO_USERDIR=(unset)
Environment:OMERO_TMPDIR=(unset)
Environment:PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games
Environment:PYTHONPATH=(unset)
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO SSL port:4064
OMERO TCP port:4063
OMERO data dir:'OMERO' Exists? True Is writable? Tru
e
OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? Tru
e (Size: 12483)

JVM settings: Blitz-${index} -Xmx621m -XX:MaxPermSize=512m -XX:+I
gnoreUnrecognizedVMOptions
JVM settings: Indexer-${index} -Xmx414m -XX:MaxPermSize=512m -XX:+I
gnoreUnrecognizedVMOptions
JVM settings: PixelData-${index} -Xmx621m -XX:MaxPermSize=512m -XX:+I
gnoreUnrecognizedVMOptions
JVM settings: Repository-${index} -Xmx414m -XX:MaxPermSize=512m -XX:+I
gnoreUnrecognizedVMOptions

OMERO.web status... [RUNNING] (PID 2176)
Django version: 1.8.17

However I cannot connect through http://localhost:4080 on my web browser.

omero@ip-172-31-18-162:~/OMERO.server/bin$ ./omero user add test TE ST -P password --admin
Server: [localhost:4064]
Username: [omero]
Password:
Password check failed for 'omero': []
Password:
Password check failed for 'omero': []
Password:
3 incorrect password attempts

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$ bin/omero db script --password secretpassword