Open Microscopy Environment

Dear Sebastian,

thank yyou for your help. Sorry , I had someting to in the lab . I'm little bit late.
I got a question
is it a good idea to remove all omero versions? I would just run brew install omero.

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me-www:omero benjaminS$ brew remove omero
Error: omero has multiple installed versions
Use `brew uninstall --force omero` to remove all versions.
ome-www:omero benjaminS$ brew upgrade omero
Error: ome/alt/omero52 not installed
ome-www:omero benjaminS$ info brew remove

thanks Julia

Hi Julia,

in the general sense, removing old versions of the server should be safe once the configuration files and other files of interest have been copied. That being said, if you want to be on the safe side, you should be able to copy the entire content of the servers outside the Homebrew prefix before removing the remaining versions and re-installing the new version e.g.

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$ mkdir ~/OMERO.server-backups
$ cp -r usr/local/Cellar/omero/* ~/OMERO.server-backups/
$ brew uninstall --force omero
$ brew install omero


Best,
Sebastien

Dear Sebastien,

thank you a lot for your great support.
The update is fine.
Omero is running.
But I have one more question.

I've created a folder named omero_data_pic_extent on /Volumes/Drobo16TB to upload new files on the Drobo 16TB.
The managed Repository is on the /Volume/Drobo_Ex_02

I've configured the fs.omero path with

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bin/omero config set 'omero_data_pic_extent/%user%_%userID%//%year%-%month%/%day%/%time%'

and linked the folder with

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ln -s /Volumes/Drobo_Ex02/ /Volumes/Drobo16TB/omero_data_pic_extent/

and restarted the server.
Now I want to check, if the uploaded data are stored at /Volumes/Drobo16TB/omero_data_pic_extent/.
I recocnized that i don't actually see the data, but the space on the Drobo is used.
In the omero insight, the uploaded data exist.
My question is:
Is it working in the right way?
Thanks Julia

Hi Julia,

As the upgrade issues are now resolved I have split the rest of the thread off under a different topic name, see https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=8095

Cheers,

Colin