Page 1 of 1

cannot stat OMERO.web

PostPosted: Fri Apr 28, 2017 10:24 am
by bernie
I've run into a problem trying to start OMERO.web after upgrading from OMERO 5.2.5 to 5.3.1. The OMERO server starts but:

-bash-4.2$ bin/omero web start
Traceback (most recent call last):
File "", line 56, in <module>
File "/usr/lib/python2.7/site-packages/django/core/management/", line 354, in execute_from_command_line
File "/usr/lib/python2.7/site-packages/django/core/management/", line 328, in execute
File "/usr/lib/python2.7/site-packages/django/", line 18, in setup
File "/usr/lib/python2.7/site-packages/django/apps/", line 85, in populate
app_config = AppConfig.create(entry)
File "/usr/lib/python2.7/site-packages/django/apps/", line 86, in create
module = import_module(entry)
File "/usr/lib64/python2.7/importlib/", line 37, in import_module
ImportError: No module named pipeline

Here is the configuration:

OMERO Diagnostics 5.3.1-ice36-b61

Commands: java -version 1.7.0 (/bin/java)
Commands: python -V 2.7.5 (/bin/python)
Commands: icegridnode --version 3.6.3 (/bin/icegridnode)
Commands: icegridadmin --version 3.6.3 (/bin/icegridadmin)
Commands: psql --version 9.4.11 (/bin/psql)

Server: icegridnode running
Server: Blitz-0 active (pid = 18804, enabled)
Server: DropBox active (pid = 18824, enabled)
Server: FileServer active (pid = 18833, enabled)
Server: Indexer-0 active (pid = 18834, enabled)
Server: MonitorServer active (pid = 18835, enabled)
Server: OMERO.Glacier2 active (pid = 18836, enabled)
Server: OMERO.IceStorm active (pid = 18838, enabled)
Server: PixelData-0 active (pid = 18849, enabled)
Server: Processor-0 active (pid = 18851, enabled)
Server: Tables-0 active (pid = 18860, enabled)
Server: TestDropBox inactive (enabled)

Log dir: /var/omero/OMERO.server/var/log exists
Log files: Blitz-0.log 835.0 KB
Log files: DropBox.log 1.0 KB
Log files: FileServer.log 0.0 KB
Log files: Indexer-0.log 4.0 KB
Log files: MonitorServer.log 1.0 KB
Log files: OMEROweb.lock 0.0 KB
Log files: OMEROweb.log 0.0 KB
Log files: PixelData-0.log 3.0 KB
Log files: Processor-0.log 59.0 KB
Log files: Tables-0.log 0.0 KB
Log files: TestDropBox.log n/a
Log files: master.err 0.0 KB
Log files: master.out 0.0 KB
Log files: Total size 0.91 MB


OMERO SSL port:4064
OMERO TCP port:4063
OMERO data dir:'/OMERO' Exists? True Is writable? True
OMERO temp dir:'/var/omero/omero/tmp' Exists? True Is writable? True (Size: 0)

JVM settings: Blitz-${index} -Xmx3759m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Indexer-${index} -Xmx2506m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: PixelData-${index} -Xmx3759m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
JVM settings: Repository-${index} -Xmx2506m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions

OMERO.web status... [NOT STARTED]
Django version: 1.8.13

We have figure installed and I have attempted to upgrade this as part of the OMERO upgrade.

any help would be appreciated,


Re: cannot stat OMERO.web

PostPosted: Fri Apr 28, 2017 10:38 am
by mtbc

I am sorry to hear that you're having difficulties. Just to be sure, did you work through all the upgrade steps without problems? I am thinking especially of ... pendencies -
Code: Select all
pip install --upgrade -r share/web/requirements-py27-all.txt


Re: cannot stat OMERO.web

PostPosted: Fri Apr 28, 2017 11:02 am
by bernie
Hi Mark,

thanks. That was it; I'd forgotten to update the OMERO.web dependencies,