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Annotations
Attributes
Diagrams
Facets
Identity Constraints
Instances
Model
Properties
Source
Used by
Main schema ome.xsd
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Open Microscopy Environment
OME XML Schema June 2012
Author:  Ilya G. Goldberg, Andrew J Patterson
Properties
attribute form default unqualified
element form default qualified
version 1
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element OME
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The OME element is a container for all information objects accessible by OME.
				These information objects include descriptions of the imaging experiments
				and the people who perform them, descriptions of the microscope, the resulting
				images and how they were acquired, the analyses performed on those images,
				and the analysis results themselves.
				An OME file may contain any or all of this information.

				With the creation of the Metadata Only Companion OME-XML and Binary Only OME-TIFF files
				the top level OME node has changed slightly.
				It can EITHER:
				    Contain all the previously expected elements
				OR:
				    Contain a single BinaryOnly element that points at
				    its Metadata Only Companion OME-XML file.
Diagram
Diagram ome_xsd.tmp#OME_UUID ome_xsd.tmp#OME_Creator ome_xsd.tmp#Project ome_xsd.tmp#Dataset ome_xsd.tmp#Experiment SPW_xsd.tmp#Plate SPW_xsd.tmp#Screen ome_xsd.tmp#Experimenter ome_xsd.tmp#ExperimenterGroup ome_xsd.tmp#Instrument ome_xsd.tmp#Image SA_xsd.tmp#StructuredAnnotations ROI_xsd.tmp#ROI ome_xsd.tmp#OME_BinaryOnly
Properties
content complex
Model
Children BinaryOnly, Dataset, Experiment, Experimenter, ExperimenterGroup, Image, Instrument, Plate, Project, ROI, Screen, StructuredAnnotations
Instance
<OME Creator="" UUID="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:SPW="http://www.openmicroscopy.org/Schemas/SPW/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06" xmlns:ROI="http://www.openmicroscopy.org/Schemas/ROI/2012-06">
  <Project ID="" Name="">{0,unbounded}</Project>
  <Dataset ID="" Name="">{0,unbounded}</Dataset>
  <Experiment ID="" Type="">{0,unbounded}</Experiment>
  <SPW:Plate ColumnNamingConvention="" Columns="" ExternalIdentifier="" FieldIndex="" ID="" Name="" RowNamingConvention="" Rows="" Status="" WellOriginX="" WellOriginY="">{0,unbounded}</SPW:Plate>
  <SPW:Screen ID="" Name="" ProtocolDescription="" ProtocolIdentifier="" ReagentSetDescription="" ReagentSetIdentifier="" Type="">{0,unbounded}</SPW:Screen>
  <Experimenter Email="" FirstName="" ID="" Institution="" LastName="" MiddleName="" UserName="">{0,unbounded}</Experimenter>
  <ExperimenterGroup ID="" Name="">{0,unbounded}</ExperimenterGroup>
  <Instrument ID="">{0,unbounded}</Instrument>
  <Image ID="" Name="">{0,unbounded}</Image>
  <SA:StructuredAnnotations>{0,1}</SA:StructuredAnnotations>
  <ROI:ROI ID="" Name="" Namespace="">{0,unbounded}</ROI:ROI>
  <BinaryOnly MetadataFile="" UUID="">{1,1}</BinaryOnly>
</OME>
Attributes
QName Type Use Annotation
Creator xsd:string optional
This is the name of the creating application of the OME-XML
and preferably its full version.
e.g "CompanyName, SoftwareName, V2.6.3456"
This is optional but we hope it will be set by applications
writing out OME-XML from scratch.
UUID UniversallyUniqueIdentifier optional
This unique identifier is used to keep track of multi part files.
						It allows the links between files to survive renaming.

						While OPTIONAL in the general case this is REQUIRED in a
						MetadataOnly Companion to a collection of BinaryOnly files.
Source
<xsd:element name="OME">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The OME element is a container for all information objects accessible by OME. These information objects include descriptions of the imaging experiments and the people who perform them, descriptions of the microscope, the resulting images and how they were acquired, the analyses performed on those images, and the analysis results themselves. An OME file may contain any or all of this information. With the creation of the Metadata Only Companion OME-XML and Binary Only OME-TIFF files the top level OME node has changed slightly. It can EITHER: Contain all the previously expected elements OR: Contain a single BinaryOnly element that points at its Metadata Only Companion OME-XML file.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:choice>
      <!-- Either: standard expected elements -->
      <xsd:sequence>
        <xsd:element ref="Project" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="Dataset" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="Experiment" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="SPW:Plate" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="SPW:Screen" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="Experimenter" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="ExperimenterGroup" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="Instrument" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="Image" minOccurs="0" maxOccurs="unbounded"/>
        <xsd:element ref="SA:StructuredAnnotations" minOccurs="0" maxOccurs="1"/>
        <xsd:element ref="ROI:ROI" minOccurs="0" maxOccurs="unbounded"/>
      </xsd:sequence>
      <!-- Or: Single BinaryOnly element -->
      <xsd:element name="BinaryOnly" minOccurs="1" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>Pointer to an external metadata file. If this element is present, then no other metadata may be present in this file, i.e. this file is a place-holder.</xsd:documentation>
        </xsd:annotation>
        <xsd:complexType>
          <xsd:attribute name="MetadataFile" type="xsd:string" use="required">
            <xsd:annotation>
              <xsd:documentation>Filename of the OME-XML metadata file for this binary data. If the file cannot be found, a search can be performed based on the UUID.</xsd:documentation>
            </xsd:annotation>
          </xsd:attribute>
          <xsd:attribute name="UUID" type="UniversallyUniqueIdentifier" use="required">
            <xsd:annotation>
              <xsd:documentation>The unique identifier of another OME-XML block whose metadata describes the binary data in this file. This UUID is considered authoritative regardless of mismatches in the filename.</xsd:documentation>
            </xsd:annotation>
          </xsd:attribute>
        </xsd:complexType>
      </xsd:element>
      <!-- End of MetadataOnly Element -->
    </xsd:choice>
    <xsd:attribute name="UUID" type="UniversallyUniqueIdentifier" use="optional">
      <xsd:annotation>
        <xsd:documentation>This unique identifier is used to keep track of multi part files. It allows the links between files to survive renaming. While OPTIONAL in the general case this is REQUIRED in a MetadataOnly Companion to a collection of BinaryOnly files.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Creator" type="xsd:string" use="optional">
      <xsd:annotation>
        <xsd:documentation>This is the name of the creating application of the OME-XML and preferably its full version. e.g "CompanyName, SoftwareName, V2.6.3456" This is optional but we hope it will be set by applications writing out OME-XML from scratch.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
  <!-- Unique IDs -->
  <xsd:key name="ChannelIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="DatasetIDKey">
    <xsd:selector xpath="OME:Dataset"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="DetectorIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Detector"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="DichroicIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Dichroic"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ExperimentIDKey">
    <xsd:selector xpath="OME:Experiment"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ExperimenterIDKey">
    <xsd:selector xpath="OME:Experimenter"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="FilterIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Filter"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="FilterSetIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:ExperimenterGroup"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ImageIDKey">
    <xsd:selector xpath="OME:Image"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="InstrumentIDKey">
    <xsd:selector xpath="OME:Instrument"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="LightSourceIDKey">
    <xsd:selector xpath="OME:Instrument/OME:LightSource"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="MicrobeamManipulationIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ObjectiveIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Objective"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="PixelsIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="PlateIDKey">
    <xsd:selector xpath="SPW:Plate"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ProjectIDKey">
    <xsd:selector xpath="OME:Project"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ReagentIDKey">
    <xsd:selector xpath="SPW:Screen/SPW:Reagent"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ScreenAcquisitionIDKey">
    <xsd:selector xpath="SPW:Screen/SPW:ScreenAcquisition"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ScreenIDKey">
    <xsd:selector xpath="SPW:Screen"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="WellIDKey">
    <xsd:selector xpath="SPW:Plate/SPW:Well"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="WellSampleIDKey">
    <xsd:selector xpath="SPW:Plate/SPW:Well/SPW:WellSample"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ROIIDKey">
    <xsd:selector xpath="ROI:ROI"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ShapeIDKey">
    <xsd:selector xpath="ROI:ROI/ROI:Union/ROI:Shape"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <!-- Unique references -->
  <xsd:key name="WellSampleImageRefIDKey">
    <xsd:selector xpath="SPW:Plate/SPW:Well/SPW:WellSample/OME:ImageRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <!-- Valid references -->
  <xsd:keyref name="DatasetExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Dataset/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="DatasetExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Dataset/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="DatasetProjectIDKeyRef" refer="OME:ProjectIDKey">
    <xsd:selector xpath="OME:Dataset/OME:ProjectRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Experiment/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentMicrobeamManipulationExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentMicrobeamManipulationLightSourceSettingsLightSourceIDKeyRef" refer="OME:LightSourceIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation/OME:LightSourceSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimenterExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Experimenter/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimenterGroupContactExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:ExperimenterGroup/OME:Contact"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimenterGroupLeaderExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:ExperimenterGroup/OME:Leader"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageDatasetIDKeyRef" refer="OME:DatasetIDKey">
    <xsd:selector xpath="OME:Image/OME:DatasetRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Image/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageExperimentIDKeyRef" refer="OME:ExperimentIDKey">
    <xsd:selector xpath="OME:Image/OME:ExperimentRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Image/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageInstrumentIDKeyRef" refer="OME:InstrumentIDKey">
    <xsd:selector xpath="OME:Image/OME:InstrumentRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageMicrobeamManipulationIDKeyRef" refer="OME:MicrobeamManipulationIDKey">
    <xsd:selector xpath="OME:Image/OME:MicrobeamManipulationRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageObjectiveSettingsObjectiveIDKeyRef" refer="OME:ObjectiveIDKey">
    <xsd:selector xpath="OME:Image/OME:ObjectiveSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelDetectorSettingsDetectorIDKeyRef" refer="OME:DetectorIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:DetectorSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelFilterSetIDKeyRef" refer="OME:FilterSetIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:FilterSetRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathExcitationFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:ExcitationFilterPath/OME:FilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathExcitationDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:ExcitationFilterPath/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathEmissionFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:EmissionFilterPath/OME:FilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathEmissionDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:EmissionFilterPath/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightSourceSettingsLightSourceIDKeyRef" refer="OME:LightSourceIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightSourceSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentFilterSetExcitationFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet/OME:ExcitationFilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentFilterSetDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentFilterSetEmissionFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet/OME:EmissionFilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentLightSourceLaserPumpLightSourceIDKey" refer="OME:LightSourceIDKey">
    <xsd:selector xpath="OME:Instrument/OME:LightSource/OME:Laser/OME:Pump"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="PlateScreenIDKeyRef" refer="OME:ScreenIDKey">
    <xsd:selector xpath="SPW:Plate/SPW:ScreenRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="PlateWellReagentIDKeyRef" refer="OME:ReagentIDKey">
    <xsd:selector xpath="SPW:Plate/SPW:Well/SPW:ReagentRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="PlateWellWellSampleImageIDKeyRef" refer="OME:ImageIDKey">
    <xsd:selector xpath="SPW:Plate/SPW:Well/SPW:WellSample/SPW:ImageRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ProjectExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Project/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ProjectExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Project/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ScreenPlateIDKeyRef" refer="OME:PlateIDKey">
    <xsd:selector xpath="SPW:Screen/SPW:PlateRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ScreenScreenAcquisitionWellSampleIDKeyRef" refer="OME:WellSampleIDKey">
    <xsd:selector xpath="SPW:Screen/SPW:ScreenAcquisition/SPW:WellSampleRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentMicrobeamManipulationROIIDKeyRef" refer="OME:ROIIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation/ROI:ROIRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageROIIDKeyRef" refer="OME:ROIIDKey">
    <xsd:selector xpath="OME:Image/ROI:ROIRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Project
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Project ID is required.
Datasets can be grouped into projects using a many-to-many relationship.
A Dataset may belong to one or more Projects by including one or more ProjectRef elements which refer to Project IDs.
Projects do not directly contain images - only by virtue of containing datasets, which themselves contain images.
Diagram
Diagram ome_xsd.tmp#Project_Name ome_xsd.tmp#Project_ID ome_xsd.tmp#Project_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#ExperimenterGroupRef ome_xsd.tmp#DatasetRef SA_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, DatasetRef, Description, ExperimenterGroupRef, ExperimenterRef
Instance
<Project ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,1}</ExperimenterRef>
  <ExperimenterGroupRef ID="">{0,1}</ExperimenterGroupRef>
  <DatasetRef ID="">{0,unbounded}</DatasetRef>
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
</Project>
Attributes
QName Type Use
ID ProjectID required
Name xsd:string optional
Source
<xsd:element name="Project">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Projects</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Project ID is required. Datasets can be grouped into projects using a many-to-many relationship. A Dataset may belong to one or more Projects by including one or more ProjectRef elements which refer to Project IDs. Projects do not directly contain images - only by virtue of containing datasets, which themselves contain images.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the project. [plane text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ExperimenterGroupRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="DatasetRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="Name" use="optional" type="xsd:string"/>
    <xsd:attribute name="ID" use="required" type="ProjectID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Project / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description for the project. [plane text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the project. [plane text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ExperimenterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This empty element has a required Experimenter ID and an optional DocumentID attribute which refers to one of the Experimenters defined within OME.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ExperimenterRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID ExperimenterID required
Source
<xsd:element name="ExperimenterRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>This empty element has a required Experimenter ID and an optional DocumentID attribute which refers to one of the Experimenters defined within OME.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ExperimenterID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ExperimenterGroupRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This empty element has a reference (the ExperimenterGroup ID attribute) to a ExperimenterGroup defined within OME.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ExperimenterGroupRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Elements Dataset, Image, Project
Attributes
QName Type Use
ID ExperimenterGroupID required
Source
<xsd:element name="ExperimenterGroupRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>This empty element has a reference (the ExperimenterGroup ID attribute) to a ExperimenterGroup defined within OME.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ExperimenterGroupID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element DatasetRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The DatasetRef element refers to a Dataset by specifying the Dataset ID attribute.
One or more DatasetRef elements may be listed within the Image element to specify what Datasets
the Image belongs to.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#DatasetRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Project
Attributes
QName Type Use
ID DatasetID required
Source
<xsd:element name="DatasetRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The DatasetRef element refers to a Dataset by specifying the Dataset ID attribute. One or more DatasetRef elements may be listed within the Image element to specify what Datasets the Image belongs to.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="DatasetID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Dataset
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
An element specifying a collection of images that are always processed together.
Images can belong to more than one Dataset, and a Dataset may contain more than one Image.
Images contain one or more DatasetRef elements to specify what datasets they belong to.
Once a Dataset has been processed in any way, its collection of images cannot be altered.
The ExperimenterRef and ExperimenterGroupRef elements specify the person and group this Dataset belongs to.
Projects may contain one or more Datasets, and Datasets may belong to one or more Projects.
This relationship is specified by listing DatasetRef elements within the Project element.
Diagram
Diagram ome_xsd.tmp#Dataset_Name ome_xsd.tmp#Dataset_ID ome_xsd.tmp#Dataset_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#ExperimenterGroupRef ome_xsd.tmp#ImageRef SA_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Description, ExperimenterGroupRef, ExperimenterRef, ImageRef
Instance
<Dataset ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,1}</ExperimenterRef>
  <ExperimenterGroupRef ID="">{0,1}</ExperimenterGroupRef>
  <ImageRef ID="">{0,unbounded}</ImageRef>
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
</Dataset>
Attributes
QName Type Use Annotation
ID DatasetID required
Name xsd:string optional
A name for the dataset that is suitable be presented to the user.
Source
<xsd:element name="Dataset">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Datasets</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>An element specifying a collection of images that are always processed together. Images can belong to more than one Dataset, and a Dataset may contain more than one Image. Images contain one or more DatasetRef elements to specify what datasets they belong to. Once a Dataset has been processed in any way, its collection of images cannot be altered. The ExperimenterRef and ExperimenterGroupRef elements specify the person and group this Dataset belongs to. Projects may contain one or more Datasets, and Datasets may belong to one or more Projects. This relationship is specified by listing DatasetRef elements within the Project element.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the dataset. [plane text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ExperimenterGroupRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ImageRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A name for the dataset that is suitable be presented to the user.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ID" use="required" type="DatasetID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Dataset / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description for the dataset. [plane text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the dataset. [plane text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ImageRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The ImageRef element is a reference to a OME:Image element.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ImageRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Elements Dataset, WellSample
Attributes
QName Type Use
ID ImageID required
Source
<xsd:element name="ImageRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The ImageRef element is a reference to a OME:Image element.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ImageID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Experiment
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This element describes the type of experiment.  The required Type attribute must contain one or more entries from the following list:
FP FRET Time-lapse 4-D+ Screen Immunocytochemistry FISH Electrophysiology  Ion-Imaging Colocalization PGI/Documentation
FRAP Photoablation Optical-Trapping Photoactivation Fluorescence-Lifetime Spectral-Imaging Other
FP refers to fluorescent proteins, PGI/Docuemntation is not a 'data' image.
The optional Description element may contain free text to further describe the experiment.
Diagram
Diagram ome_xsd.tmp#Experiment_Type ome_xsd.tmp#Experiment_ID ome_xsd.tmp#Experiment_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#MicrobeamManipulation
Properties
content complex
Used by
Element OME
Model
Children Description, ExperimenterRef, MicrobeamManipulation
Instance
<Experiment ID="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,1}</ExperimenterRef>
  <MicrobeamManipulation ID="" Type="">{0,unbounded}</MicrobeamManipulation>
</Experiment>
Attributes
QName Type Use Annotation
ID ExperimentID required
Type list of restriction of xsd:string optional
A term to describe the type of experiment.
Source
<xsd:element name="Experiment">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Experiments</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element describes the type of experiment. The required Type attribute must contain one or more entries from the following list: FP FRET Time-lapse 4-D+ Screen Immunocytochemistry FISH Electrophysiology Ion-Imaging Colocalization PGI/Documentation FRAP Photoablation Optical-Trapping Photoactivation Fluorescence-Lifetime Spectral-Imaging Other FP refers to fluorescent proteins, PGI/Docuemntation is not a 'data' image. The optional Description element may contain free text to further describe the experiment.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the experiment. [plane text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>This is a link to the Experimenter who conducted the experiment</xsd:documentation>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="MicrobeamManipulation" minOccurs="0" maxOccurs="unbounded"/>
    </xsd:sequence>
    <xsd:attribute name="Type" use="optional">
      <xsd:annotation>
        <xsd:documentation>A term to describe the type of experiment.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:list>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="FP"/>
              <xsd:enumeration value="FRET"/>
              <!-- Förster resonance energy transfer, also known as fluorescence resonance energy transfer, resonance energy transfer (RET) or electronic energy transfer (EET) -->
              <xsd:enumeration value="TimeLapse"/>
              <!--  Time-lapse microscopy (microphotography, photomicrography) -->
              <xsd:enumeration value="FourDPlus"/>
              <xsd:enumeration value="Screen"/>
              <xsd:enumeration value="Immunocytochemistry"/>
              <xsd:enumeration value="Immunofluorescence"/>
              <xsd:enumeration value="FISH"/>
              <!-- Fluorescent in situ hybridization -->
              <xsd:enumeration value="Electrophysiology"/>
              <xsd:enumeration value="IonImaging"/>
              <xsd:enumeration value="Colocalization"/>
              <xsd:enumeration value="PGIDocumentation"/>
              <xsd:enumeration value="FluorescenceLifetime"/>
              <!-- Fluorescence lifetime imaging (FLIM) -->
              <xsd:enumeration value="SpectralImaging"/>
              <xsd:enumeration value="Photobleaching"/>
              <xsd:enumeration value="SPIM"/>
              <!-- Selective or Single Plane Illumination Microscopy -->
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:list>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="ID" use="required" type="ExperimentID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Experiment / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description for the experiment. [plane text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the experiment. [plane text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element MicrobeamManipulation
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Defines a microbeam operation type and the region of the image it was applied to.
The LightSourceRef element is a reference to a LightSource specified in the Instrument element which was used for a technique other than illumination for
the purpose of imaging. For example, a laser used for photobleaching.
Diagram
Diagram ome_xsd.tmp#MicrobeamManipulation_ID ome_xsd.tmp#MicrobeamManipulation_Type ome_xsd.tmp#MicrobeamManipulation_Description ROI_xsd.tmp#ROIRef ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#LightSourceSettings
Properties
content complex
Used by
Element Experiment
Model
Children Description, ExperimenterRef, LightSourceSettings, ROIRef
Instance
<MicrobeamManipulation ID="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:ROI="http://www.openmicroscopy.org/Schemas/ROI/2012-06">
  <Description>{0,1}</Description>
  <ROI:ROIRef ID="">{1,unbounded}</ROI:ROIRef>
  <ExperimenterRef ID="">{1,1}</ExperimenterRef>
  <LightSourceSettings Attenuation="" ID="" Wavelength="">{0,unbounded}</LightSourceSettings>
</MicrobeamManipulation>
Attributes
QName Type Use Annotation
ID MicrobeamManipulationID required
Type list of restriction of xsd:string optional
The type of manipulation performed.
Source
<xsd:element name="MicrobeamManipulation">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>MicrobeamManipulations</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Defines a microbeam operation type and the region of the image it was applied to. The LightSourceRef element is a reference to a LightSource specified in the Instrument element which was used for a technique other than illumination for the purpose of imaging. For example, a laser used for photobleaching.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the Microbeam Manipulation. [plane text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ROI:ROIRef" minOccurs="1" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="1" maxOccurs="1"/>
      <xsd:element ref="LightSourceSettings" minOccurs="0" maxOccurs="unbounded"/>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="MicrobeamManipulationID"/>
    <xsd:attribute name="Type" use="optional">
      <xsd:annotation>
        <xsd:documentation>The type of manipulation performed.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:list>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="FRAP"/>
              <!-- Fluorescence recovery after photobleaching -->
              <xsd:enumeration value="FLIP"/>
              <!-- Fluorescence Loss in Photobleaching -->
              <xsd:enumeration value="InverseFRAP"/>
              <!-- iFRAP, inverse FRAP -->
              <xsd:enumeration value="Photoablation"/>
              <xsd:enumeration value="Photoactivation"/>
              <xsd:enumeration value="Uncaging"/>
              <xsd:enumeration value="OpticalTrapping"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:list>
      </xsd:simpleType>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element MicrobeamManipulation / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description for the Microbeam Manipulation. [plane text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the Microbeam Manipulation. [plane text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element LightSourceSettings
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Settings ome_xsd.tmp#LightSourceSettings_ID ome_xsd.tmp#LightSourceSettings_Attenuation ome_xsd.tmp#LightSourceSettings_Wavelength
Type extension of Settings
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use Annotation
Attenuation PercentFraction optional
The Attenuation of the light source [units:none]
A fraction, as a value from 0.0 to 1.0.
ID LightSourceID required
Wavelength PositiveInt optional
The Wavelength of the light source. nanometres[nm]
Source
<xsd:element name="LightSourceSettings">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>LightSourceSettingsCombinations</plural>
      </xsdfu>
    </xsd:appinfo>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Settings">
        <xsd:attribute name="ID" use="required" type="LightSourceID"/>
        <xsd:attribute name="Attenuation" use="optional" type="PercentFraction">
          <xsd:annotation>
            <xsd:documentation>The Attenuation of the light source [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Wavelength" use="optional" type="PositiveInt">
          <xsd:annotation>
            <xsd:documentation>The Wavelength of the light source. nanometres[nm]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Experimenter
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This element describes a person who performed an imaging experiment.
This person may also be a user of the OME system, in which case the UserName element contains their login name.
Experimenters may belong to one or more groups which are specified using one or more ExperimenterGroupRef elements.
Diagram
Diagram ome_xsd.tmp#Experimenter_ID ome_xsd.tmp#Experimenter_FirstName ome_xsd.tmp#Experimenter_MiddleName ome_xsd.tmp#Experimenter_LastName ome_xsd.tmp#Experimenter_Email ome_xsd.tmp#Experimenter_Institution ome_xsd.tmp#Experimenter_UserName SA_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef
Instance
<Experimenter Email="" FirstName="" ID="" Institution="" LastName="" MiddleName="" UserName="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
</Experimenter>
Attributes
QName Type Use Annotation
Email xsd:string optional
A person's email address. [valid email address as string]
FirstName xsd:string optional
First name, sometime called christian name or given name or forename. [plain text string]
ID ExperimenterID required
Institution xsd:string optional
A person's Institution
The organizing structure that people belong to other than groups.  A university, or company, etc.
We do not specify a department element, and do not mean for Institution to be used in this way.
We simply wish to say XXX at YYY.  Where YYY has a better chance of being tied to a geographically fixed location
and of being more recognizable than a group of experimenters. [plain text string]
LastName xsd:string optional
A person's last name sometimes called surname or family name. [plain text string]
MiddleName xsd:string optional
Any other names. [plain text string]
UserName xsd:string optional
This is the username of the experimenter (in a 'unix' or 'database' sense). [plain text string]
Source
<xsd:element name="Experimenter">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Experimenters</plural>
        <global/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element describes a person who performed an imaging experiment. This person may also be a user of the OME system, in which case the UserName element contains their login name. Experimenters may belong to one or more groups which are specified using one or more ExperimenterGroupRef elements.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="ExperimenterID"/>
    <xsd:attribute name="FirstName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>First name, sometime called christian name or given name or forename. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="MiddleName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>Any other names. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="LastName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A person's last name sometimes called surname or family name. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Email" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A person's email address. [valid email address as string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Institution" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A person's Institution The organizing structure that people belong to other than groups. A university, or company, etc. We do not specify a department element, and do not mean for Institution to be used in this way. We simply wish to say XXX at YYY. Where YYY has a better chance of being tied to a geographically fixed location and of being more recognizable than a group of experimenters. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="UserName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:appinfo>
          <xsdfu>
            <unique/>
          </xsdfu>
        </xsd:appinfo>
        <xsd:documentation>This is the username of the experimenter (in a 'unix' or 'database' sense). [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ExperimenterGroup
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The ExperimenterGroupID is required.
Information should ideally be specified for at least one Leader as a contact for the group.
The Leaders are themselves Experimenters.
Diagram
Diagram ome_xsd.tmp#ExperimenterGroup_Name ome_xsd.tmp#ExperimenterGroup_ID ome_xsd.tmp#ExperimenterGroup_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#Leader SA_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Description, ExperimenterRef, Leader
Instance
<ExperimenterGroup ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,unbounded}</ExperimenterRef>
  <Leader ID="">{0,unbounded}</Leader>
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
</ExperimenterGroup>
Attributes
QName Type Use
ID ExperimenterGroupID required
Name xsd:string optional
Source
<xsd:element name="ExperimenterGroup">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>ExperimenterGroups</plural>
        <global/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The ExperimenterGroupID is required. Information should ideally be specified for at least one Leader as a contact for the group. The Leaders are themselves Experimenters.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the group. [plane text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
              <childordered/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="Leader" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:appinfo>
          <xsdfu>
            <unique/>
          </xsdfu>
        </xsd:appinfo>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ID" use="required" type="ExperimenterGroupID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ExperimenterGroup / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description for the group. [plane text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the group. [plane text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Leader
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Contact information for a ExperimenterGroup leader specified using a reference
to an Experimenter element defined elsewhere in the document.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Leader_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID ExperimenterID required
Source
<xsd:element name="Leader">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Leaders</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Contact information for a ExperimenterGroup leader specified using a reference to an Experimenter element defined elsewhere in the document.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ExperimenterID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Instrument
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This element describes the instrument used to capture the Image.
It is primarily a container for manufacturer's model and catalog
numbers for the Microscope, LightSource, Detector, Objective and
Filters components.
The Objective element contains the additional elements LensNA and Magnification.
The Filters element can be composed either of separate excitation,
emission filters and a dichroic mirror or a single filter set.
Within the Image itself, a reference is made to this one Filter element.
There may be multiple light sources, detectors, objectives and filters on a microscope.
Each of these has their own ID attribute, which can be referred to from Channel.
It is understood that the light path configuration can be different
for each channel, but cannot be different for each timepoint or
each plane of an XYZ stack.
Diagram
Diagram ome_xsd.tmp#Instrument_ID ome_xsd.tmp#Microscope ome_xsd.tmp#LightSource ome_xsd.tmp#Detector ome_xsd.tmp#Objective ome_xsd.tmp#FilterSet ome_xsd.tmp#Filter ome_xsd.tmp#Dichroic
Properties
content complex
Used by
Element OME
Model
Children Detector, Dichroic, Filter, FilterSet, LightSource, Microscope, Objective
Instance
<Instrument ID="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <Microscope LotNumber="" Manufacturer="" Model="" SerialNumber="" Type="">{0,1}</Microscope>
  <LightSource ID="" LotNumber="" Manufacturer="" Model="" Power="" SerialNumber="">{0,unbounded}</LightSource>
  <Detector AmplificationGain="" Gain="" ID="" LotNumber="" Manufacturer="" Model="" Offset="" SerialNumber="" Type="" Voltage="" Zoom="">{0,unbounded}</Detector>
  <Objective CalibratedMagnification="" Correction="" ID="" Immersion="" Iris="" LensNA="" LotNumber="" Manufacturer="" Model="" NominalMagnification="" SerialNumber="" WorkingDistance="">{0,unbounded}</Objective>
  <FilterSet ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="">{0,unbounded}</FilterSet>
  <Filter FilterWheel="" ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="" Type="">{0,unbounded}</Filter>
  <Dichroic ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="">{0,unbounded}</Dichroic>
</Instrument>
Attributes
QName Type Use
ID InstrumentID required
Source
<xsd:element name="Instrument">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Instruments</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element describes the instrument used to capture the Image. It is primarily a container for manufacturer's model and catalog numbers for the Microscope, LightSource, Detector, Objective and Filters components. The Objective element contains the additional elements LensNA and Magnification. The Filters element can be composed either of separate excitation, emission filters and a dichroic mirror or a single filter set. Within the Image itself, a reference is made to this one Filter element. There may be multiple light sources, detectors, objectives and filters on a microscope. Each of these has their own ID attribute, which can be referred to from Channel. It is understood that the light path configuration can be different for each channel, but cannot be different for each timepoint or each plane of an XYZ stack.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="Microscope" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="LightSource" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Detector" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Objective" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="FilterSet" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Filter" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Dichroic" minOccurs="0" maxOccurs="unbounded"/>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="InstrumentID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Microscope
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The microscope's manufacturer specification.
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Microscope_Type
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Attributes
QName Type Use Annotation
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
Type restriction of xsd:string optional
Source
<xsd:element name="Microscope">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Microscopes</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The microscope's manufacturer specification.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:attribute name="Type" use="optional">
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="Upright"/>
              <xsd:enumeration value="Inverted"/>
              <xsd:enumeration value="Dissection"/>
              <xsd:enumeration value="Electrophysiology"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element LightSource
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The lightsource for the instrument.  An instrument may have several light sources.
The type of lightsource is specified by one of the child-elements which are 'Laser', 'Filament', 'Arc' or 'LightEmittingDiode'.
Each of the light source types has its own Type attribute to further differentiate the light source
(eg, Nd-YAG for Laser or Hg for Arc).
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#LightSource_ID ome_xsd.tmp#LightSource_Power ome_xsd.tmp#Laser ome_xsd.tmp#Filament ome_xsd.tmp#Arc ome_xsd.tmp#LightEmittingDiode
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Model
Children Arc, Filament, Laser, LightEmittingDiode
Instance
<LightSource ID="" LotNumber="" Manufacturer="" Model="" Power="" SerialNumber="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <Laser FrequencyMultiplication="" LaserMedium="" PockelCell="" Pulse="" RepetitionRate="" Tuneable="" Type="" Wavelength="">{1,1}</Laser>
  <Filament Type="">{1,1}</Filament>
  <Arc Type="">{1,1}</Arc>
  <LightEmittingDiode>{1,1}</LightEmittingDiode>
</LightSource>
Attributes
QName Type Use Annotation
ID LightSourceID required
A LightSource ID must be specified for each light source, and the individual
light sources can be referred to by their LightSource IDs (eg from Channel).
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
Power xsd:float optional
The light-source power. units milliwatts[mW]
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
Source
<xsd:element name="LightSource">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>LightSources</plural>
        <abstractproprietary/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The lightsource for the instrument. An instrument may have several light sources. The type of lightsource is specified by one of the child-elements which are 'Laser', 'Filament', 'Arc' or 'LightEmittingDiode'. Each of the light source types has its own Type attribute to further differentiate the light source (eg, Nd-YAG for Laser or Hg for Arc).</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:choice minOccurs="1" maxOccurs="1">
          <xsd:element ref="Laser" minOccurs="1" maxOccurs="1"/>
          <xsd:element ref="Filament" minOccurs="1" maxOccurs="1"/>
          <xsd:element ref="Arc" minOccurs="1" maxOccurs="1"/>
          <xsd:element ref="LightEmittingDiode" minOccurs="1" maxOccurs="1"/>
        </xsd:choice>
        <xsd:attribute name="ID" use="required" type="LightSourceID">
          <xsd:annotation>
            <xsd:documentation>A LightSource ID must be specified for each light source, and the individual light sources can be referred to by their LightSource IDs (eg from Channel).</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Power" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The light-source power. units milliwatts[mW]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Laser
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Laser types are specified using two attributes - the Type and the LaserMedium.
Diagram
Diagram ome_xsd.tmp#Laser_Type ome_xsd.tmp#Laser_LaserMedium ome_xsd.tmp#Laser_Wavelength ome_xsd.tmp#Laser_FrequencyMultiplication ome_xsd.tmp#Laser_Tuneable ome_xsd.tmp#Laser_Pulse ome_xsd.tmp#Laser_PockelCell ome_xsd.tmp#Laser_RepetitionRate ome_xsd.tmp#Pump
Properties
content complex
Used by
Element LightSource
Model
Children Pump
Instance
<Laser FrequencyMultiplication="" LaserMedium="" PockelCell="" Pulse="" RepetitionRate="" Tuneable="" Type="" Wavelength="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <Pump ID="">{0,1}</Pump>
</Laser>
Attributes
QName Type Use Annotation
FrequencyMultiplication PositiveInt optional
FrequencyMultiplication that may be specified. [units:none]
LaserMedium restriction of xsd:string optional
The Medium attribute specifies the actual lasing medium
for a given laser type.
PockelCell xsd:boolean optional
If true the laser has a PockelCell to rotate the polarization of the beam. [flag]
Pulse restriction of xsd:string optional
The Pulse mode of the laser.
RepetitionRate xsd:float optional
The is the rate in Hz at which the laser pulses if
the Pulse type is 'Repetitive'. hertz[Hz]
Tuneable xsd:boolean optional
Whether or not the laser is Tuneable [flag]
Type restriction of xsd:string optional
Type is the general category of laser.
Wavelength PositiveInt optional
The Wavelength of the laser in nanometres[nm]
Source
<xsd:element name="Laser">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Lasers</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Laser types are specified using two attributes - the Type and the LaserMedium.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="Pump" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>The Laser element may contain a Pump sub-element which refers to a LightSource used as a laser pump.</xsd:documentation>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="Type" use="optional">
      <xsd:annotation>
        <xsd:documentation>Type is the general category of laser.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="Excimer"/>
          <xsd:enumeration value="Gas"/>
          <xsd:enumeration value="MetalVapor"/>
          <xsd:enumeration value="SolidState"/>
          <xsd:enumeration value="Dye"/>
          <xsd:enumeration value="Semiconductor"/>
          <xsd:enumeration value="FreeElectron"/>
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="LaserMedium" use="optional">
      <xsd:annotation>
        <xsd:documentation>The Medium attribute specifies the actual lasing medium for a given laser type.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <!-- MetalVaporLaserMedia -->
          <xsd:enumeration value="Cu"/>
          <xsd:enumeration value="Ag"/>
          <!-- ExcimerLaserMedia -->
          <xsd:enumeration value="ArFl"/>
          <xsd:enumeration value="ArCl"/>
          <xsd:enumeration value="KrFl"/>
          <xsd:enumeration value="KrCl"/>
          <xsd:enumeration value="XeFl"/>
          <xsd:enumeration value="XeCl"/>
          <xsd:enumeration value="XeBr"/>
          <!-- GasLaserMedia -->
          <xsd:enumeration value="N"/>
          <xsd:enumeration value="Ar"/>
          <xsd:enumeration value="Kr"/>
          <xsd:enumeration value="Xe"/>
          <xsd:enumeration value="HeNe"/>
          <xsd:enumeration value="HeCd"/>
          <xsd:enumeration value="CO"/>
          <xsd:enumeration value="CO2"/>
          <xsd:enumeration value="H2O"/>
          <xsd:enumeration value="HFl"/>
          <!-- SolidStateLaserMedia -->
          <xsd:enumeration value="NdGlass"/>
          <xsd:enumeration value="NdYAG"/>
          <xsd:enumeration value="ErGlass"/>
          <xsd:enumeration value="ErYAG"/>
          <xsd:enumeration value="HoYLF"/>
          <xsd:enumeration value="HoYAG"/>
          <xsd:enumeration value="Ruby"/>
          <xsd:enumeration value="TiSapphire"/>
          <xsd:enumeration value="Alexandrite"/>
          <!-- DyeLaserMedia -->
          <xsd:enumeration value="Rhodamine6G"/>
          <xsd:enumeration value="CoumarinC30"/>
          <!-- SemiconductorLaserMedia -->
          <xsd:enumeration value="GaAs"/>
          <xsd:enumeration value="GaAlAs"/>
          <!-- FreeElectronLaserMedia -->
          <xsd:enumeration value="EMinus"/>
          <!-- OtherLaserMedia -->
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="Wavelength" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>The Wavelength of the laser in nanometres[nm]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="FrequencyMultiplication" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>FrequencyMultiplication that may be specified. [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Tuneable" use="optional" type="xsd:boolean">
      <xsd:annotation>
        <xsd:documentation>Whether or not the laser is Tuneable [flag]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Pulse" use="optional">
      <xsd:annotation>
        <xsd:documentation>The Pulse mode of the laser.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="CW"/>
          <xsd:enumeration value="Single"/>
          <xsd:enumeration value="QSwitched"/>
          <xsd:enumeration value="Repetitive"/>
          <xsd:enumeration value="ModeLocked"/>
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="PockelCell" use="optional" type="xsd:boolean">
      <xsd:annotation>
        <xsd:documentation>If true the laser has a PockelCell to rotate the polarization of the beam. [flag]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="RepetitionRate" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The is the rate in Hz at which the laser pulses if the Pulse type is 'Repetitive'. hertz[Hz]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Pump
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Pump element is a reference to a LightSource.  It is used within the Laser element to specify the light source for the laser's pump (if any).
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Pump_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Laser
Attributes
QName Type Use
ID LightSourceID required
Source
<xsd:element name="Pump">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Pumps</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Pump element is a reference to a LightSource. It is used within the Laser element to specify the light source for the laser's pump (if any).</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="LightSourceID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Filament
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Filament element is used to describe various kinds of filament bulbs such as Incadescent or Halogen.
The Power of the Filament is now stored in the LightSource.
Diagram
Diagram ome_xsd.tmp#Filament_Type
Properties
content complex
Used by
Element LightSource
Attributes
QName Type Use Annotation
Type restriction of xsd:string optional
The type of filament.
Source
<xsd:element name="Filament">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Filaments</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Filament element is used to describe various kinds of filament bulbs such as Incadescent or Halogen. The Power of the Filament is now stored in the LightSource.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:attribute name="Type" use="optional">
      <xsd:annotation>
        <xsd:documentation>The type of filament.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="Incandescent"/>
          <xsd:enumeration value="Halogen"/>
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Arc
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Arc element is used to describe various kinds of Arc lamps - Hg, Xe, HgXe.
The Power of the Arc is now stored in the LightSource.
Diagram
Diagram ome_xsd.tmp#Arc_Type
Properties
content complex
Used by
Element LightSource
Attributes
QName Type Use Annotation
Type restriction of xsd:string optional
The type of Arc lamp.
Source
<xsd:element name="Arc">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Arcs</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Arc element is used to describe various kinds of Arc lamps - Hg, Xe, HgXe. The Power of the Arc is now stored in the LightSource.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:attribute name="Type" use="optional">
      <xsd:annotation>
        <xsd:documentation>The type of Arc lamp.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="Hg"/>
          <xsd:enumeration value="Xe"/>
          <xsd:enumeration value="HgXe"/>
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element LightEmittingDiode
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The LightEmittingDiode element is used to describe
				various kinds of LED lamps.

				As the LightEmittingDiode is inside a LightSource it already has
				available the values from ManufacturerSpec
				(Manufacturer, Model, SerialNumber, LotNumber)
				And the values from LightSource which includes Power in milliwatts

				We have looked at extending this element but have had a problem
				producing a generic solution.

				Possible attributes talked about adding include:
					Power in lumens - but this is complicated by multi-channel
						devices like CoolLED where each channel's power is different
					Wavelength Range - not a simple value so would require
						multiple attributes or a child element
					Angle of Projection - this would be further affected by the
						optics used for filtering the naked LED or that combine
						power from multiple devices

					These values are further affected if you over-drive the LED
					resulting in a more complex system

				Another issue is that LED's may not be used directly for
				illumination but as drivers for secondary emissions from doped
				fiber optics. This would require the fiber optics to be modeled.

				Thanks to Paul Goodwin of Applied Precision of information about
				this topic.
Diagram
Diagram
Used by
Element LightSource
Source
<xsd:element name="LightEmittingDiode">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>LightEmittingDiodes</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The LightEmittingDiode element is used to describe various kinds of LED lamps. As the LightEmittingDiode is inside a LightSource it already has available the values from ManufacturerSpec (Manufacturer, Model, SerialNumber, LotNumber) And the values from LightSource which includes Power in milliwatts We have looked at extending this element but have had a problem producing a generic solution. Possible attributes talked about adding include: Power in lumens - but this is complicated by multi-channel devices like CoolLED where each channel's power is different Wavelength Range - not a simple value so would require multiple attributes or a child element Angle of Projection - this would be further affected by the optics used for filtering the naked LED or that combine power from multiple devices These values are further affected if you over-drive the LED resulting in a more complex system Another issue is that LED's may not be used directly for illumination but as drivers for secondary emissions from doped fiber optics. This would require the fiber optics to be modeled. Thanks to Paul Goodwin of Applied Precision of information about this topic.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Detector
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The type of detector used to capture the image.
				The Detector ID can be used as a reference within the Channel element in the Image element.

				Each attribute now has an indication of what type of detector
				it applies to. This is preparatory work for cleaning up and
				possibly splitting this object into sub-types.
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Detector_Gain ome_xsd.tmp#Detector_Voltage ome_xsd.tmp#Detector_Offset ome_xsd.tmp#Detector_Zoom ome_xsd.tmp#Detector_AmplificationGain ome_xsd.tmp#Detector_ID ome_xsd.tmp#Detector_Type
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Attributes
QName Type Use Annotation
AmplificationGain xsd:float optional
Gain applied to the detector signal.
This is the electronic gain (as apposed to the inherent gain) that is set for the detector. [units:none] {used:EMCCD#EMGain}
Gain xsd:float optional
The Detector Gain for this detector, as a float. [units:none] {used:CCD,EMCCD,PMT}
ID DetectorID required
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
Offset xsd:float optional
The Detector Offset. [units:none] {used:CCD,EMCCD}
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
Type restriction of xsd:string optional
The Type of detector. E.g. CCD, PMT, EMCCD etc.
Voltage xsd:float optional
The Voltage of the detector (e.g. PMT voltage) as a float. volts[V] {used:PMT}
Zoom xsd:float optional
The Zoom or "Confocal Zoom" or "Scan Zoom" for a detector. [units:none] {used:PMT}
Source
<xsd:element name="Detector">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Detectors</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The type of detector used to capture the image. The Detector ID can be used as a reference within the Channel element in the Image element. Each attribute now has an indication of what type of detector it applies to. This is preparatory work for cleaning up and possibly splitting this object into sub-types.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:attribute name="Gain" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Detector Gain for this detector, as a float. [units:none] {used:CCD,EMCCD,PMT}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Voltage" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Voltage of the detector (e.g. PMT voltage) as a float. volts[V] {used:PMT}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Offset" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Detector Offset. [units:none] {used:CCD,EMCCD}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Zoom" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Zoom or "Confocal Zoom" or "Scan Zoom" for a detector. [units:none] {used:PMT}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="AmplificationGain" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>Gain applied to the detector signal. This is the electronic gain (as apposed to the inherent gain) that is set for the detector. [units:none] {used:EMCCD#EMGain}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="ID" use="required" type="DetectorID"/>
        <xsd:attribute name="Type" use="optional">
          <xsd:annotation>
            <xsd:documentation>The Type of detector. E.g. CCD, PMT, EMCCD etc.</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="CCD"/>
              <!-- Charge-Coupled Device -->
              <xsd:enumeration value="IntensifiedCCD"/>
              <xsd:enumeration value="AnalogVideo"/>
              <xsd:enumeration value="PMT"/>
              <!-- Photomultiplier tube -->
              <xsd:enumeration value="Photodiode"/>
              <xsd:enumeration value="Spectroscopy"/>
              <xsd:enumeration value="LifetimeImaging"/>
              <xsd:enumeration value="CorrelationSpectroscopy"/>
              <xsd:enumeration value="FTIR"/>
              <!-- Fourier transform infrared spectroscopy -->
              <xsd:enumeration value="EMCCD"/>
              <!-- Electron Multiplying Charge Coupled Device -->
              <xsd:enumeration value="APD"/>
              <!-- Avalanche Photodiode -->
              <xsd:enumeration value="CMOS"/>
              <!-- complementary metal oxide semiconductor -->
              <xsd:enumeration value="EBCCD"/>
              <!-- electron-bombarded charge-coupled device -->
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Objective
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description of the microscope's objective lens.
Required elements include the lens numerical aperture,
and the magnification, both of which a floating
point (real) numbers.
The values are those that are fixed for a particular
objective: either because it has been manufactured to
this specification or the value has been measured on
this particular objective.
Correction: This is the type of correction coating applied to this lens.
Immersion: This is the types of immersion medium the lens is designed to
work with. It is not the same as 'Medium' in ObjectiveRef (a
single type) as here Immersion can have compound values like 'Multi'.
LensNA: The numerical aperture of the lens (as a float)
NominalMagnification: The specified magnification e.g. x10
CalibratedMagnification: The measured magnification e.g. x10.3
WorkingDistance: WorkingDistance of the lens. The Units are microns[um].
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Objective_ID ome_xsd.tmp#Objective_Correction ome_xsd.tmp#Objective_Immersion ome_xsd.tmp#Objective_LensNA ome_xsd.tmp#Objective_NominalMagnification ome_xsd.tmp#Objective_CalibratedMagnification ome_xsd.tmp#Objective_WorkingDistance ome_xsd.tmp#Objective_Iris
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Attributes
QName Type Use Annotation
CalibratedMagnification xsd:float optional
The magnification of the lens as measured by a calibration process- i.e. '59.987' for a 60X lens. [units:none]
Correction restriction of xsd:string optional
The correction applied to the lens
ID ObjectiveID required
Immersion restriction of xsd:string optional
The immersion medium the lens is designed for
Iris xsd:boolean optional
Records whether or not the objective was fitted with an Iris. [flag]
LensNA xsd:float optional
The numerical aperture of the lens expressed as a floating point (real) number.
Expected range 0.02 - 1.5 [units:none]
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
NominalMagnification PositiveInt optional
The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. [units:none]
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
WorkingDistance xsd:float optional
The working distance of the lens expressed as a floating point (real) number. Units are microns[um].
Source
<xsd:element name="Objective">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Objectives</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>A description of the microscope's objective lens. Required elements include the lens numerical aperture, and the magnification, both of which a floating point (real) numbers. The values are those that are fixed for a particular objective: either because it has been manufactured to this specification or the value has been measured on this particular objective. Correction: This is the type of correction coating applied to this lens. Immersion: This is the types of immersion medium the lens is designed to work with. It is not the same as 'Medium' in ObjectiveRef (a single type) as here Immersion can have compound values like 'Multi'. LensNA: The numerical aperture of the lens (as a float) NominalMagnification: The specified magnification e.g. x10 CalibratedMagnification: The measured magnification e.g. x10.3 WorkingDistance: WorkingDistance of the lens. The Units are microns[um].</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:attribute name="ID" use="required" type="ObjectiveID"/>
        <xsd:attribute name="Correction" use="optional">
          <xsd:annotation>
            <xsd:documentation>The correction applied to the lens</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="UV"/>
              <xsd:enumeration value="PlanApo"/>
              <xsd:enumeration value="PlanFluor"/>
              <xsd:enumeration value="SuperFluor"/>
              <xsd:enumeration value="VioletCorrected"/>
              <xsd:enumeration value="Achro"/>
              <xsd:enumeration value="Achromat"/>
              <xsd:enumeration value="Fluor"/>
              <xsd:enumeration value="Fl"/>
              <xsd:enumeration value="Fluar"/>
              <xsd:enumeration value="Neofluar"/>
              <xsd:enumeration value="Fluotar"/>
              <xsd:enumeration value="Apo"/>
              <xsd:enumeration value="PlanNeofluar"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
        <xsd:attribute name="Immersion" use="optional">
          <xsd:annotation>
            <xsd:documentation>The immersion medium the lens is designed for</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="Oil"/>
              <xsd:enumeration value="Water"/>
              <xsd:enumeration value="WaterDipping"/>
              <xsd:enumeration value="Air"/>
              <xsd:enumeration value="Multi"/>
              <xsd:enumeration value="Glycerol"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
        <xsd:attribute name="LensNA" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The numerical aperture of the lens expressed as a floating point (real) number. Expected range 0.02 - 1.5 [units:none]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="NominalMagnification" use="optional" type="PositiveInt">
          <xsd:annotation>
            <xsd:documentation>The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. [units:none]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="CalibratedMagnification" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The magnification of the lens as measured by a calibration process- i.e. '59.987' for a 60X lens. [units:none]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="WorkingDistance" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The working distance of the lens expressed as a floating point (real) number. Units are microns[um].</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Iris" use="optional" type="xsd:boolean">
          <xsd:annotation>
            <xsd:documentation>Records whether or not the objective was fitted with an Iris. [flag]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element FilterSet
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Filter set manufacturer specification
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#FilterSet_ID ome_xsd.tmp#FilterSet_ExcitationFilterRef ome_xsd.tmp#DichroicRef ome_xsd.tmp#FilterSet_EmissionFilterRef
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Model
Children DichroicRef, EmissionFilterRef, ExcitationFilterRef
Instance
<FilterSet ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <ExcitationFilterRef ID="">{0,unbounded}</ExcitationFilterRef>
  <DichroicRef ID="">{0,1}</DichroicRef>
  <EmissionFilterRef ID="">{0,unbounded}</EmissionFilterRef>
</FilterSet>
Attributes
QName Type Use Annotation
ID FilterSetID required
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
Source
<xsd:element name="FilterSet">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>FilterSets</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Filter set manufacturer specification</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:sequence>
          <xsd:element name="ExcitationFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
            <xsd:annotation>
              <xsd:appinfo>
                <xsdfu>
                  <plural>ExcitationFilters</plural>
                  <manytomany/>
                </xsdfu>
              </xsd:appinfo>
              <xsd:documentation>The Filters placed in the Excitation light path.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element ref="DichroicRef" minOccurs="0" maxOccurs="1"/>
          <xsd:element name="EmissionFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
            <xsd:annotation>
              <xsd:appinfo>
                <xsdfu>
                  <plural>EmissionFilters</plural>
                  <manytomany/>
                </xsdfu>
              </xsd:appinfo>
              <xsd:documentation>The Filters placed in the Emission light path.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:sequence>
        <xsd:attribute name="ID" use="required" type="FilterSetID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element FilterSet / ExcitationFilterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Filters placed in the Excitation light path.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterRef_ID ome_xsd.tmp#FilterRef
Type FilterRef
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs unbounded
Attributes
QName Type Use
ID FilterID required
Source
<xsd:element name="ExcitationFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>ExcitationFilters</plural>
        <manytomany/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Filters placed in the Excitation light path.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element DichroicRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#DichroicRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Elements FilterSet, LightPath
Attributes
QName Type Use
ID DichroicID required
Source
<xsd:element name="DichroicRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="DichroicID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element FilterSet / EmissionFilterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Filters placed in the Emission light path.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterRef_ID ome_xsd.tmp#FilterRef
Type FilterRef
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs unbounded
Attributes
QName Type Use
ID FilterID required
Source
<xsd:element name="EmissionFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>EmissionFilters</plural>
        <manytomany/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Filters placed in the Emission light path.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Filter
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A filter is either an excitation or emission filters.
There should be one filter element specified per wavelength in the image.
The channel number associated with a filter set is specified in Channel.
It is based on the FilterSpec type, so has the required attributes Manufacturer, Model, and LotNumber.
It may also contain a Type attribute which may be set to
'LongPass', 'ShortPass', 'BandPass', 'MultiPass',
'Dichroic', 'NeutralDensity', or 'Other'.
It can be associated with an optional FilterWheel - Note: this is not the same as a FilterSet
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Filter_Type ome_xsd.tmp#Filter_FilterWheel ome_xsd.tmp#Filter_ID ome_xsd.tmp#TransmittanceRange
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Model
Children TransmittanceRange
Instance
<Filter FilterWheel="" ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <TransmittanceRange CutIn="" CutInTolerance="" CutOut="" CutOutTolerance="" Transmittance="">{0,1}</TransmittanceRange>
</Filter>
Attributes
QName Type Use Annotation
FilterWheel xsd:string optional
A filter 'wheel' in OME can refer to any arrangement of filters in a filter holder of any shape. It could, for example, be a filter slider. [plain text string]
ID FilterID required
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
Type restriction of xsd:string optional
Source
<xsd:element name="Filter">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Filters</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>A filter is either an excitation or emission filters. There should be one filter element specified per wavelength in the image. The channel number associated with a filter set is specified in Channel. It is based on the FilterSpec type, so has the required attributes Manufacturer, Model, and LotNumber. It may also contain a Type attribute which may be set to 'LongPass', 'ShortPass', 'BandPass', 'MultiPass', 'Dichroic', 'NeutralDensity', or 'Other'. It can be associated with an optional FilterWheel - Note: this is not the same as a FilterSet</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:sequence>
          <xsd:element ref="TransmittanceRange" minOccurs="0" maxOccurs="1"/>
        </xsd:sequence>
        <xsd:attribute name="Type" use="optional">
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="Dichroic"/>
              <xsd:enumeration value="LongPass"/>
              <xsd:enumeration value="ShortPass"/>
              <xsd:enumeration value="BandPass"/>
              <xsd:enumeration value="MultiPass"/>
              <xsd:enumeration value="NeutralDensity"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
        <xsd:attribute name="FilterWheel" use="optional" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation>A filter 'wheel' in OME can refer to any arrangement of filters in a filter holder of any shape. It could, for example, be a filter slider. [plain text string]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="ID" use="required" type="FilterID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element TransmittanceRange
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This records the range of wavelengths that are transmitted by the filter. It also records the maximum amount of light transmitted.
Diagram
Diagram ome_xsd.tmp#TransmittanceRange_CutIn ome_xsd.tmp#TransmittanceRange_CutOut ome_xsd.tmp#TransmittanceRange_CutInTolerance ome_xsd.tmp#TransmittanceRange_CutOutTolerance ome_xsd.tmp#TransmittanceRange_Transmittance
Properties
content complex
Used by
Element Filter
Attributes
QName Type Use Annotation
CutIn PositiveInt optional
CutIn is the wavelength below which there is less than 50% transmittance for a filter. Units: nanometres[nm].
CutInTolerance NonNegativeInt optional
CutInTolerance Units: nanometres[nm],
CutOut PositiveInt optional
CutOut is the wavelength above which there is less than 50% transmittance for a filter. Units: nanometres[nm].
CutOutTolerance NonNegativeInt optional
CutOutTolerance Units: nanometres[nm],
Transmittance PercentFraction optional
The amount of light the filter transmits at a maximum [units:none]
A fraction, as a value from 0.0 to 1.0.
Source
<xsd:element name="TransmittanceRange">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>TransmittanceRanges</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This records the range of wavelengths that are transmitted by the filter. It also records the maximum amount of light transmitted.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:attribute name="CutIn" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>CutIn is the wavelength below which there is less than 50% transmittance for a filter. Units: nanometres[nm].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="CutOut" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>CutOut is the wavelength above which there is less than 50% transmittance for a filter. Units: nanometres[nm].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="CutInTolerance" use="optional" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>CutInTolerance Units: nanometres[nm],</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="CutOutTolerance" use="optional" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>CutOutTolerance Units: nanometres[nm],</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Transmittance" use="optional" type="PercentFraction">
      <xsd:annotation>
        <xsd:documentation>The amount of light the filter transmits at a maximum [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Dichroic
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The dichromatic beamsplitter or dichroic mirror used for this filter combination.
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Dichroic_ID
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Attributes
QName Type Use Annotation
ID DichroicID required
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
Source
<xsd:element name="Dichroic">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Dichroics</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The dichromatic beamsplitter or dichroic mirror used for this filter combination.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:attribute name="ID" use="required" type="DichroicID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Image
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This element describes the actual image and its meta-data.
				The elements that are references (ending in Ref or Settings) refer to
				elements defined outside of the Image element. Ref elements are simple
				links, while Settings elements are links with additional values.

				If any of the required Image attributes or elements are missing, its
				guaranteed to be an invalid document. The required attributes and
				elements are ID and Pixels.

				ExperimenterRef is required for all Images with well formed LSIDs.
				ImageType is a vendor-specific designation of the type of image this is.
				Examples of ImageType include 'STK', 'SoftWorx', etc.
				The Name attributes are in all cases the name of the element
				instance. In this case, the name of the image, not necessarily the filename.
				PixelSize* is in microns[um].
Diagram
Diagram ome_xsd.tmp#Image_ID ome_xsd.tmp#Image_Name ome_xsd.tmp#Image_AcquisitionDate ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#Image_Description ome_xsd.tmp#ExperimentRef ome_xsd.tmp#ExperimenterGroupRef ome_xsd.tmp#InstrumentRef ome_xsd.tmp#ObjectiveSettings ome_xsd.tmp#ImagingEnvironment ome_xsd.tmp#StageLabel ome_xsd.tmp#Pixels ROI_xsd.tmp#ROIRef ome_xsd.tmp#MicrobeamManipulationRef SA_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AcquisitionDate, AnnotationRef, Description, ExperimentRef, ExperimenterGroupRef, ExperimenterRef, ImagingEnvironment, InstrumentRef, MicrobeamManipulationRef, ObjectiveSettings, Pixels, ROIRef, StageLabel
Instance
<Image ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:ROI="http://www.openmicroscopy.org/Schemas/ROI/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <AcquisitionDate>{0,1}</AcquisitionDate>
  <ExperimenterRef ID="">{0,1}</ExperimenterRef>
  <Description>{0,1}</Description>
  <ExperimentRef ID="">{0,1}</ExperimentRef>
  <ExperimenterGroupRef ID="">{0,1}</ExperimenterGroupRef>
  <InstrumentRef ID="">{0,1}</InstrumentRef>
  <ObjectiveSettings CorrectionCollar="" ID="" Medium="" RefractiveIndex="">{0,1}</ObjectiveSettings>
  <ImagingEnvironment AirPressure="" CO2Percent="" Humidity="" Temperature="">{0,1}</ImagingEnvironment>
  <StageLabel Name="" X="" Y="" Z="">{0,1}</StageLabel>
  <Pixels DimensionOrder="" ID="" PhysicalSizeX="" PhysicalSizeY="" PhysicalSizeZ="" SizeC="" SizeT="" SizeX="" SizeY="" SizeZ="" TimeIncrement="" Type="">{1,1}</Pixels>
  <ROI:ROIRef ID="">{0,unbounded}</ROI:ROIRef>
  <MicrobeamManipulationRef ID="">{0,unbounded}</MicrobeamManipulationRef>
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
</Image>
Attributes
QName Type Use
ID ImageID required
Name xsd:string optional
Source
<xsd:element name="Image">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Images</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element describes the actual image and its meta-data. The elements that are references (ending in Ref or Settings) refer to elements defined outside of the Image element. Ref elements are simple links, while Settings elements are links with additional values. If any of the required Image attributes or elements are missing, its guaranteed to be an invalid document. The required attributes and elements are ID and Pixels. ExperimenterRef is required for all Images with well formed LSIDs. ImageType is a vendor-specific designation of the type of image this is. Examples of ImageType include 'STK', 'SoftWorx', etc. The Name attributes are in all cases the name of the element instance. In this case, the name of the image, not necessarily the filename. PixelSize* is in microns[um].</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="AcquisitionDate" minOccurs="0" maxOccurs="1" type="xsd:dateTime">
        <xsd:annotation>
          <xsd:documentation>The acquisition date of the Image. The element contains a string in the ISO 8601 dateTime format (i.e. 1988-04-07T18:39:09)</xsd:documentation>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the image. [plane text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimentRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ExperimenterGroupRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="InstrumentRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ObjectiveSettings" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ImagingEnvironment" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="StageLabel" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="Pixels" minOccurs="1" maxOccurs="1"/>
      <xsd:element ref="ROI:ROIRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="MicrobeamManipulationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="ImageID"/>
    <xsd:attribute name="Name" use="optional" type="xsd:string"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Image / AcquisitionDate
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The acquisition date of the Image.
The element contains a string in the ISO 8601 dateTime format (i.e. 1988-04-07T18:39:09)
Diagram
Diagram
Type xsd:dateTime
Properties
content simple
minOccurs 0
maxOccurs 1
Source
<xsd:element name="AcquisitionDate" minOccurs="0" maxOccurs="1" type="xsd:dateTime">
  <xsd:annotation>
    <xsd:documentation>The acquisition date of the Image. The element contains a string in the ISO 8601 dateTime format (i.e. 1988-04-07T18:39:09)</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Image / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description for the image. [plane text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the image. [plane text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ExperimentRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ExperimentRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Image
Attributes
QName Type Use
ID ExperimentID required
Source
<xsd:element name="ExperimentRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ExperimentID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element InstrumentRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This empty element can be used (via the required Instrument ID attribute) to refer to an Instrument defined within OME.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#InstrumentRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Image
Attributes
QName Type Use
ID InstrumentID required
Source
<xsd:element name="InstrumentRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>This empty element can be used (via the required Instrument ID attribute) to refer to an Instrument defined within OME.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="InstrumentID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ObjectiveSettings
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This holds the setting applied to an objective as well as a
reference to the objective.
The ID is the objective used in this case.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Settings ome_xsd.tmp#ObjectiveSettings_ID ome_xsd.tmp#ObjectiveSettings_CorrectionCollar ome_xsd.tmp#ObjectiveSettings_Medium ome_xsd.tmp#ObjectiveSettings_RefractiveIndex
Type extension of Settings
Type hierarchy
Properties
content complex
Used by
Element Image
Attributes
QName Type Use Annotation
CorrectionCollar xsd:float optional
The CorrectionCollar is normally an adjustable ring on the
objective. Each has an arbitrary scale on it so the values
is unit-less. [units:none]
ID ObjectiveID required
Medium restriction of xsd:string optional
RefractiveIndex xsd:float optional
The RefractiveIndex is that of the immersion medium. This is
a ratio so it also unit-less. [units:none]
Source
<xsd:element name="ObjectiveSettings">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>ObjectiveSettingsCombinations</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This holds the setting applied to an objective as well as a reference to the objective. The ID is the objective used in this case.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Settings">
        <xsd:attribute name="ID" use="required" type="ObjectiveID"/>
        <xsd:attribute name="CorrectionCollar" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The CorrectionCollar is normally an adjustable ring on the objective. Each has an arbitrary scale on it so the values is unit-less. [units:none]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Medium" use="optional">
          <xsd:simpleType>
            <xsd:annotation>
              <xsd:documentation>A description of a Medium used for the lens. The Medium is the actual immersion medium used in this case.</xsd:documentation>
            </xsd:annotation>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="Air"/>
              <xsd:enumeration value="Oil"/>
              <xsd:enumeration value="Water"/>
              <xsd:enumeration value="Glycerol"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
        <xsd:attribute name="RefractiveIndex" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The RefractiveIndex is that of the immersion medium. This is a ratio so it also unit-less. [units:none]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ImagingEnvironment
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This describes the environment that the biological sample was in
during the experiment.
Diagram
Diagram ome_xsd.tmp#ImagingEnvironment_Temperature ome_xsd.tmp#ImagingEnvironment_AirPressure ome_xsd.tmp#ImagingEnvironment_Humidity ome_xsd.tmp#ImagingEnvironment_CO2Percent
Properties
content complex
Used by
Element Image
Attributes
QName Type Use Annotation
AirPressure xsd:float optional
AirPressure is in millibars[mbar].
CO2Percent PercentFraction optional
Carbon Dioxide concentration around the sample [units:none]
A fraction, as a value from 0.0 to 1.0.
Humidity PercentFraction optional
Humidity around the sample [units:none]
A fraction, as a value from 0.0 to 1.0.
Temperature xsd:float optional
The Temperature is in Celsius[C].
Source
<xsd:element name="ImagingEnvironment">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>ImagingEnvironments</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This describes the environment that the biological sample was in during the experiment.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:attribute name="Temperature" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The Temperature is in Celsius[C].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="AirPressure" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>AirPressure is in millibars[mbar].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Humidity" use="optional" type="PercentFraction">
      <xsd:annotation>
        <xsd:documentation>Humidity around the sample [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="CO2Percent" use="optional" type="PercentFraction">
      <xsd:annotation>
        <xsd:documentation>Carbon Dioxide concentration around the sample [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element StageLabel
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The StageLabel is used to specify a name and position for a stage position in the microscope's reference frame.
Diagram
Diagram ome_xsd.tmp#StageLabel_Name ome_xsd.tmp#StageLabel_X ome_xsd.tmp#StageLabel_Y ome_xsd.tmp#StageLabel_Z
Properties
content complex
Used by
Element Image
Attributes
QName Type Use Annotation
Name xsd:string required
X xsd:float optional
The X position of the stage label. [units are in the microscope reference frame]
Y xsd:float optional
The Y position of the stage label. [units are in the microscope reference frame]
Z xsd:float optional
The Z position of the stage label. [units are in the microscope reference frame]
Source
<xsd:element name="StageLabel">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>StageLabels</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The StageLabel is used to specify a name and position for a stage position in the microscope's reference frame.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:attribute name="Name" use="required" type="xsd:string"/>
    <xsd:attribute name="X" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The X position of the stage label. [units are in the microscope reference frame]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Y" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The Y position of the stage label. [units are in the microscope reference frame]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Z" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The Z position of the stage label. [units are in the microscope reference frame]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Pixels
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
NOTE: Pixels is DEPRECATED, but it is still required.
				This is just notice that the contents of Pixels will be
				moved up to Image in the next release. This is because there
				has only been 1 Pixels object in each Image for some time.
				The concept of multiple Pixels sets for one Image failed to
				take off. It is therefore redundant.

				The Image will be unreadable if any of the required Pixel attributes are missing.
				The Pixels themselves are stored within the file compressed by plane, and encoded in Base64.
				The Pixels element must contain a list of BinData, each containing a single plane of pixels.
				These Pixels elements, when read in document order, must produce a 5-D pixel array
				of the size specified in this element, and in the dimension order specified by 'DimensionOrder'.
Diagram
Diagram ome_xsd.tmp#Pixels_ID ome_xsd.tmp#Pixels_DimensionOrder ome_xsd.tmp#Pixels_Type ome_xsd.tmp#Pixels_SizeX ome_xsd.tmp#Pixels_SizeY ome_xsd.tmp#Pixels_SizeZ ome_xsd.tmp#Pixels_SizeC ome_xsd.tmp#Pixels_SizeT ome_xsd.tmp#Pixels_PhysicalSizeX ome_xsd.tmp#Pixels_PhysicalSizeY ome_xsd.tmp#Pixels_PhysicalSizeZ ome_xsd.tmp#Pixels_TimeIncrement ome_xsd.tmp#Channel BinaryFile_xsd.tmp#BinData ome_xsd.tmp#TiffData ome_xsd.tmp#MetadataOnly ome_xsd.tmp#Plane SA_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element Image
Model
Children AnnotationRef, Bin:BinData, Channel, MetadataOnly, Plane, TiffData
Instance
<Pixels DimensionOrder="" ID="" PhysicalSizeX="" PhysicalSizeY="" PhysicalSizeZ="" SizeC="" SizeT="" SizeX="" SizeY="" SizeZ="" TimeIncrement="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:BIN="http://www.openmicroscopy.org/Schemas/BinaryFile/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <Channel AcquisitionMode="" Color="-1" ContrastMethod="" EmissionWavelength="" ExcitationWavelength="" Fluor="" ID="" IlluminationType="" Name="" NDFilter="" PinholeSize="" PockelCellSetting="" SamplesPerPixel="">{0,unbounded}</Channel>
  <BIN:BinData BigEndian="" Compression="none" Length="">{1,unbounded}</BIN:BinData>
  <TiffData FirstC="0" FirstT="0" FirstZ="0" IFD="0" PlaneCount="">{1,unbounded}</TiffData>
  <MetadataOnly>{1,1}</MetadataOnly>
  <Plane DeltaT="" ExposureTime="" PositionX="" PositionY="" PositionZ="" TheC="" TheT="" TheZ="">{0,unbounded}</Plane>
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
</Pixels>
Attributes
QName Type Use Annotation
DimensionOrder restriction of xsd:string required
The order in which the individual planes of data are interleaved.
ID PixelsID required
PhysicalSizeX PositiveFloat optional
Physical size of a pixel in microns[um].
PhysicalSizeY PositiveFloat optional
Physical size of a pixel in microns[um].
PhysicalSizeZ PositiveFloat optional
Physical size of a pixel in microns[um].
SizeC PositiveInt required
Dimensional size of pixel data array [units:none]
SizeT PositiveInt required
Dimensional size of pixel data array [units:none]
SizeX PositiveInt required
Dimensional size of pixel data array [units:none]
SizeY PositiveInt required
Dimensional size of pixel data array [units:none]
SizeZ PositiveInt required
Dimensional size of pixel data array [units:none]
TimeIncrement xsd:float optional
TimeIncrement is used for time series that have a global
timing specification instead of per-timepoint timing info.
For example in a video stream.  The unit is seconds[s].
Type PixelType required
The variable type used to represent each pixel in the image.
Source
<xsd:element name="Pixels">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Pixels</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>NOTE: Pixels is DEPRECATED, but it is still required. This is just notice that the contents of Pixels will be moved up to Image in the next release. This is because there has only been 1 Pixels object in each Image for some time. The concept of multiple Pixels sets for one Image failed to take off. It is therefore redundant. The Image will be unreadable if any of the required Pixel attributes are missing. The Pixels themselves are stored within the file compressed by plane, and encoded in Base64. The Pixels element must contain a list of BinData, each containing a single plane of pixels. These Pixels elements, when read in document order, must produce a 5-D pixel array of the size specified in this element, and in the dimension order specified by 'DimensionOrder'.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="Channel" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <ordered/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:choice minOccurs="1" maxOccurs="1">
        <xsd:element ref="BIN:BinData" minOccurs="1" maxOccurs="unbounded"/>
        <xsd:element ref="TiffData" minOccurs="1" maxOccurs="unbounded"/>
        <xsd:element ref="MetadataOnly" minOccurs="1" maxOccurs="1"/>
      </xsd:choice>
      <xsd:element ref="Plane" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="PixelsID"/>
    <xsd:attribute name="DimensionOrder" use="required">
      <xsd:annotation>
        <xsd:documentation>The order in which the individual planes of data are interleaved.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="XYZCT"/>
          <xsd:enumeration value="XYZTC"/>
          <xsd:enumeration value="XYCTZ"/>
          <xsd:enumeration value="XYCZT"/>
          <xsd:enumeration value="XYTCZ"/>
          <xsd:enumeration value="XYTZC"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="Type" use="required" type="PixelType">
      <xsd:annotation>
        <xsd:documentation>The variable type used to represent each pixel in the image.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="SizeX" use="required" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="SizeY" use="required" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="SizeZ" use="required" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="SizeC" use="required" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="SizeT" use="required" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PhysicalSizeX" use="optional" type="PositiveFloat">
      <xsd:annotation>
        <xsd:documentation>Physical size of a pixel in microns[um].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PhysicalSizeY" use="optional" type="PositiveFloat">
      <xsd:annotation>
        <xsd:documentation>Physical size of a pixel in microns[um].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PhysicalSizeZ" use="optional" type="PositiveFloat">
      <xsd:annotation>
        <xsd:documentation>Physical size of a pixel in microns[um].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="TimeIncrement" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>TimeIncrement is used for time series that have a global timing specification instead of per-timepoint timing info. For example in a video stream. The unit is seconds[s].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Channel
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
There must be one per channel in the Image, even for a single-plane image.
And information about how each of them was acquired is stored in the various optional *Ref elements.  Each Logical Channel is composed of one or more
ChannelComponents.  For example, an entire spectrum in an FTIR experiment may be stored in a single Logical Channel with each discrete wavenumber of the spectrum
constituting a ChannelComponent of the FTIR Logical Channel.  An RGB image where the Red, Green and Blue components do not reflect discrete probes but are
instead the output of a color camera would be treated similarly - one Logical channel with three ChannelComponents in this case.
The total number of ChannelComponents for a set of pixels must equal SizeC.
The IlluminationType attribute is a string enumeration which may be set to 'Transmitted', 'Epifluorescence', 'Oblique', or 'NonLinear'.
The user interface logic for labeling a given channel for the user should use the first existing attribute in the following sequence:
Name -> Fluor -> EmissionWavelength -> ChannelComponent/Index.
Diagram
Diagram ome_xsd.tmp#Channel_ID ome_xsd.tmp#Channel_Name ome_xsd.tmp#Channel_SamplesPerPixel ome_xsd.tmp#Channel_IlluminationType ome_xsd.tmp#Channel_PinholeSize ome_xsd.tmp#Channel_AcquisitionMode ome_xsd.tmp#Channel_ContrastMethod ome_xsd.tmp#Channel_ExcitationWavelength ome_xsd.tmp#Channel_EmissionWavelength ome_xsd.tmp#Channel_Fluor ome_xsd.tmp#Channel_NDFilter ome_xsd.tmp#Channel_PockelCellSetting ome_xsd.tmp#Channel_Color ome_xsd.tmp#LightSourceSettings ome_xsd.tmp#DetectorSettings ome_xsd.tmp#FilterSetRef SA_xsd.tmp#AnnotationRef ome_xsd.tmp#LightPath
Properties
content complex
Used by
Element Pixels
Model
Children AnnotationRef, DetectorSettings, FilterSetRef, LightPath, LightSourceSettings
Instance
<Channel AcquisitionMode="" Color="-1" ContrastMethod="" EmissionWavelength="" ExcitationWavelength="" Fluor="" ID="" IlluminationType="" Name="" NDFilter="" PinholeSize="" PockelCellSetting="" SamplesPerPixel="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <LightSourceSettings Attenuation="" ID="" Wavelength="">{0,1}</LightSourceSettings>
  <DetectorSettings Binning="" Gain="" ID="" Offset="" ReadOutRate="" Voltage="">{0,1}</DetectorSettings>
  <FilterSetRef ID="">{0,1}</FilterSetRef>
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
  <LightPath>{0,1}</LightPath>
</Channel>
Attributes
QName Type Default Use Annotation
AcquisitionMode restriction of xsd:string optional
AcquisitionMode describes the type of microscopy performed for each channel
Color Color -1 optional
A color used to render this channel - encoded as RGBA
The default value "-1" is #FFFFFFFF so solid white (it is a signed 32 bit value)
NOTE: Prior to the 2012-06 schema the default value was incorrect and produced a transparent red not solid white.
ContrastMethod restriction of xsd:string optional
ContrastMethod describes the technique used to achieve contrast for each channel
EmissionWavelength PositiveInt optional
Emission wavelength of excitation for a particular channel, in nanometres[nm].
ExcitationWavelength PositiveInt optional
Excitation wavelength of excitation for a particular channel, in nanometres[nm].
Fluor xsd:string optional
The Fluor attribute is used for fluorescence images.
This is the name of the fluorophore used to produce this channel [plain text string]
ID ChannelID required
IlluminationType restriction of xsd:string optional
The method of illumination used to capture the channel.
NDFilter xsd:float optional
The NDfilter attribute is used to specify the combined effect of any neutral density filters used. [units optical density expressed as a PercentFraction]
Name xsd:string optional
A name for the channel that is suitable be presented to the user.
PinholeSize xsd:float optional
The optional PinholeSize attribute allows specifying adjustable
pin hole diameters for confocal microscopes (units microns[um]).
PockelCellSetting xsd:int optional
The PockelCellSetting used for this channel. This is the amount the polarization of the beam is rotated by. [units:none]
SamplesPerPixel PositiveInt optional
The number of samples the detector takes to form each pixel value.
The SamplesPerPixel attribute is the number of channel components in the logical channel. [units:none]
Source
<xsd:element name="Channel">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Channels</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>There must be one per channel in the Image, even for a single-plane image. And information about how each of them was acquired is stored in the various optional *Ref elements. Each Logical Channel is composed of one or more ChannelComponents. For example, an entire spectrum in an FTIR experiment may be stored in a single Logical Channel with each discrete wavenumber of the spectrum constituting a ChannelComponent of the FTIR Logical Channel. An RGB image where the Red, Green and Blue components do not reflect discrete probes but are instead the output of a color camera would be treated similarly - one Logical channel with three ChannelComponents in this case. The total number of ChannelComponents for a set of pixels must equal SizeC. The IlluminationType attribute is a string enumeration which may be set to 'Transmitted', 'Epifluorescence', 'Oblique', or 'NonLinear'. The user interface logic for labeling a given channel for the user should use the first existing attribute in the following sequence: Name -> Fluor -> EmissionWavelength -> ChannelComponent/Index.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="LightSourceSettings" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="DetectorSettings" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="FilterSetRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="LightPath" minOccurs="0" maxOccurs="1"/>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="ChannelID"/>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A name for the channel that is suitable be presented to the user.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="SamplesPerPixel" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>The number of samples the detector takes to form each pixel value. The SamplesPerPixel attribute is the number of channel components in the logical channel. [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="IlluminationType" use="optional">
      <xsd:annotation>
        <xsd:documentation>The method of illumination used to capture the channel.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="Transmitted"/>
          <xsd:enumeration value="Epifluorescence"/>
          <xsd:enumeration value="Oblique"/>
          <xsd:enumeration value="NonLinear"/>
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="PinholeSize" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The optional PinholeSize attribute allows specifying adjustable pin hole diameters for confocal microscopes (units microns[um]).</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="AcquisitionMode" use="optional">
      <xsd:annotation>
        <xsd:documentation>AcquisitionMode describes the type of microscopy performed for each channel</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="WideField"/>
          <xsd:enumeration value="LaserScanningConfocalMicroscopy"/>
          <!-- CLSM or LSCM -->
          <xsd:enumeration value="SpinningDiskConfocal"/>
          <xsd:enumeration value="SlitScanConfocal"/>
          <xsd:enumeration value="MultiPhotonMicroscopy"/>
          <!-- laser scanning multiphoton microscopy (LSMM), two photon microscopy -->
          <xsd:enumeration value="StructuredIllumination"/>
          <xsd:enumeration value="SingleMoleculeImaging"/>
          <xsd:enumeration value="TotalInternalReflection"/>
          <xsd:enumeration value="FluorescenceLifetime"/>
          <xsd:enumeration value="SpectralImaging"/>
          <xsd:enumeration value="FluorescenceCorrelationSpectroscopy"/>
          <xsd:enumeration value="NearFieldScanningOpticalMicroscopy"/>
          <!-- NSOM -->
          <xsd:enumeration value="SecondHarmonicGenerationImaging"/>
          <!-- Second harmonic imaging microscopy (SHIM) -->
          <xsd:enumeration value="PALM"/>
          <!-- photo-activated localization microscopy, photo-activation localization microscopy -->
          <xsd:enumeration value="STORM"/>
          <!-- stochastic optical reconstruction microscopy -->
          <xsd:enumeration value="STED"/>
          <!-- stimulated emission depletion -->
          <xsd:enumeration value="TIRF"/>
          <!-- total internal reflection fluorescence (TIRFM) -->
          <xsd:enumeration value="FSM"/>
          <!-- Fluorescence speckle microscopy -->
          <xsd:enumeration value="LCM"/>
          <!-- Laser capture microdissection -->
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="ContrastMethod" use="optional">
      <xsd:annotation>
        <xsd:documentation>ContrastMethod describes the technique used to achieve contrast for each channel</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="Brightfield"/>
          <xsd:enumeration value="Phase"/>
          <xsd:enumeration value="DIC"/>
          <!-- Differential Interference Contrast -->
          <xsd:enumeration value="HoffmanModulation"/>
          <!-- Hoffman Modulation Contrast (HMC) -->
          <xsd:enumeration value="ObliqueIllumination"/>
          <xsd:enumeration value="PolarizedLight"/>
          <!-- Polarization Microscopy -->
          <xsd:enumeration value="Darkfield"/>
          <!-- Dark Field Imaging -->
          <xsd:enumeration value="Fluorescence"/>
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="ExcitationWavelength" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>Excitation wavelength of excitation for a particular channel, in nanometres[nm].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="EmissionWavelength" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>Emission wavelength of excitation for a particular channel, in nanometres[nm].</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Fluor" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>The Fluor attribute is used for fluorescence images. This is the name of the fluorophore used to produce this channel [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="NDFilter" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The NDfilter attribute is used to specify the combined effect of any neutral density filters used. [units optical density expressed as a PercentFraction]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PockelCellSetting" use="optional" type="xsd:int">
      <xsd:annotation>
        <xsd:documentation>The PockelCellSetting used for this channel. This is the amount the polarization of the beam is rotated by. [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Color" use="optional" type="Color" default="-1">
      <xsd:annotation>
        <xsd:documentation>A color used to render this channel - encoded as RGBA The default value "-1" is #FFFFFFFF so solid white (it is a signed 32 bit value) NOTE: Prior to the 2012-06 schema the default value was incorrect and produced a transparent red not solid white.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element DetectorSettings
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This holds the setting applied to a detector as well as a
				reference to the detector.
				The ID is the detector used in this case.

				Each attribute now has an indication of what type of detector
				it applies to. This is preparatory work for cleaning up and
				possibly splitting this object into sub-types.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Settings ome_xsd.tmp#DetectorSettings_ID ome_xsd.tmp#DetectorSettings_Offset ome_xsd.tmp#DetectorSettings_Gain ome_xsd.tmp#DetectorSettings_Voltage ome_xsd.tmp#DetectorSettings_ReadOutRate ome_xsd.tmp#DetectorSettings_Binning
Type extension of Settings
Type hierarchy
Properties
content complex
Used by
Element Channel
Attributes
QName Type Use Annotation
Binning restriction of xsd:string optional
Represents the number of pixels that are combined to form larger pixels. {used:CCD,EMCCD}
Gain xsd:float optional
The Gain of the detector. [units:none] {used:CCD,EMCCD,PMT}
ID DetectorID required
Offset xsd:float optional
The Offset of the detector. [units none] {used:CCD,EMCCD}
ReadOutRate xsd:float optional
The speed at which the detector can count pixels.  {used:CCD,EMCCD}
Units of ReadOutRate is MHz. This is the bytes per second that
can be read from the detector (like a baud rate). megahertz[MHz]
Voltage xsd:float optional
The Voltage of the detector. volts[V] {used:PMT}
Source
<xsd:element name="DetectorSettings">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>DetectorSettingsCombinations</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This holds the setting applied to a detector as well as a reference to the detector. The ID is the detector used in this case. Each attribute now has an indication of what type of detector it applies to. This is preparatory work for cleaning up and possibly splitting this object into sub-types.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Settings">
        <xsd:attribute name="ID" use="required" type="DetectorID"/>
        <xsd:attribute name="Offset" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Offset of the detector. [units none] {used:CCD,EMCCD}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Gain" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Gain of the detector. [units:none] {used:CCD,EMCCD,PMT}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Voltage" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Voltage of the detector. volts[V] {used:PMT}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="ReadOutRate" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The speed at which the detector can count pixels. {used:CCD,EMCCD} Units of ReadOutRate is MHz. This is the bytes per second that can be read from the detector (like a baud rate). megahertz[MHz]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Binning" use="optional">
          <xsd:annotation>
            <xsd:documentation>Represents the number of pixels that are combined to form larger pixels. {used:CCD,EMCCD}</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="1x1"/>
              <xsd:enumeration value="2x2"/>
              <xsd:enumeration value="4x4"/>
              <xsd:enumeration value="8x8"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element FilterSetRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterSetRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Channel
Attributes
QName Type Use
ID FilterSetID required
Source
<xsd:element name="FilterSetRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="FilterSetID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element LightPath
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A description of the light path
Diagram
Diagram ome_xsd.tmp#LightPath_ExcitationFilterRef ome_xsd.tmp#DichroicRef ome_xsd.tmp#LightPath_EmissionFilterRef
Properties
content complex
Used by
Element Channel
Model
Children DichroicRef, EmissionFilterRef, ExcitationFilterRef
Instance
<LightPath xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <ExcitationFilterRef ID="">{0,unbounded}</ExcitationFilterRef>
  <DichroicRef ID="">{0,1}</DichroicRef>
  <EmissionFilterRef ID="">{0,unbounded}</EmissionFilterRef>
</LightPath>
Source
<xsd:element name="LightPath">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>LightPaths</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>A description of the light path</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="ExcitationFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <plural>ExcitationFilters</plural>
              <parentordered/>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
          <xsd:documentation>The Filters placed in the Excitation light path.</xsd:documentation>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="DichroicRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element name="EmissionFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <plural>EmissionFilters</plural>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
          <xsd:documentation>The Filters placed in the Emission light path.</xsd:documentation>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element LightPath / ExcitationFilterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Filters placed in the Excitation light path.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterRef_ID ome_xsd.tmp#FilterRef
Type FilterRef
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs unbounded
Attributes
QName Type Use
ID FilterID required
Source
<xsd:element name="ExcitationFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>ExcitationFilters</plural>
        <parentordered/>
        <manytomany/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Filters placed in the Excitation light path.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element LightPath / EmissionFilterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Filters placed in the Emission light path.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterRef_ID ome_xsd.tmp#FilterRef
Type FilterRef
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs unbounded
Attributes
QName Type Use
ID FilterID required
Source
<xsd:element name="EmissionFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>EmissionFilters</plural>
        <manytomany/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Filters placed in the Emission light path.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element TiffData
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This described the location of the pixel data in a tiff file.
Diagram
Diagram ome_xsd.tmp#TiffData_IFD ome_xsd.tmp#TiffData_FirstZ ome_xsd.tmp#TiffData_FirstT ome_xsd.tmp#TiffData_FirstC ome_xsd.tmp#TiffData_PlaneCount ome_xsd.tmp#TiffData_UUID
Properties
content complex
Used by
Element Pixels
Model
Children UUID
Instance
<TiffData FirstC="0" FirstT="0" FirstZ="0" IFD="0" PlaneCount="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06">
  <UUID FileName="">{0,1}</UUID>
</TiffData>
Attributes
QName Type Default Use Annotation
FirstC NonNegativeInt 0 optional
Gives the C position of the image plane at the specified IFD. Indexed from 0.
Default is 0 (the first C position). [units:none]
FirstT NonNegativeInt 0 optional
Gives the T position of the image plane at the specified IFD. Indexed from 0.
Default is 0 (the first T position). [units:none]
FirstZ NonNegativeInt 0 optional
Gives the Z position of the image plane at the specified IFD. Indexed from 0.
Default is 0 (the first Z position). [units:none]
IFD NonNegativeInt 0 optional
Gives the IFD(s) for which this element is applicable. Indexed from 0.
Default is 0 (the first IFD). [units:none]
PlaneCount NonNegativeInt optional
Gives the number of IFDs affected. Dimension order of IFDs is given by the enclosing
Pixels element's DimensionOrder attribute. Default is the number of IFDs in the TIFF
file, unless an IFD is specified, in which case the default is 1. [units:none]
Source
<xsd:element name="TiffData">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>TiffDataBlocks</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This described the location of the pixel data in a tiff file.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="UUID" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>This must be used when the IFDs are located in another file. Note: It is permissible for this to be self referential.</xsd:documentation>
        </xsd:annotation>
        <xsd:complexType>
          <xsd:simpleContent>
            <xsd:extension base="UniversallyUniqueIdentifier">
              <xsd:attribute name="FileName" use="optional" type="xsd:string">
                <xsd:annotation>
                  <xsd:documentation>This can be used when the IFDs are located in another file. The / (forward slash) is used as the path separator. A relative path is recommended. However an absolute path can be specified. Default is to use the file the ome-xml data has been pulled from. Note: It is permissible for this to be self referential. The file image1.tiff may contain ome-xml data that has FilePath="image1.tiff" or "./image1.tiff"</xsd:documentation>
                </xsd:annotation>
              </xsd:attribute>
            </xsd:extension>
          </xsd:simpleContent>
        </xsd:complexType>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="IFD" type="NonNegativeInt" default="0" use="optional">
      <xsd:annotation>
        <xsd:documentation>Gives the IFD(s) for which this element is applicable. Indexed from 0. Default is 0 (the first IFD). [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="FirstZ" type="NonNegativeInt" default="0" use="optional">
      <xsd:annotation>
        <xsd:documentation>Gives the Z position of the image plane at the specified IFD. Indexed from 0. Default is 0 (the first Z position). [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="FirstT" type="NonNegativeInt" default="0" use="optional">
      <xsd:annotation>
        <xsd:documentation>Gives the T position of the image plane at the specified IFD. Indexed from 0. Default is 0 (the first T position). [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="FirstC" type="NonNegativeInt" default="0" use="optional">
      <xsd:annotation>
        <xsd:documentation>Gives the C position of the image plane at the specified IFD. Indexed from 0. Default is 0 (the first C position). [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PlaneCount" use="optional" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>Gives the number of IFDs affected. Dimension order of IFDs is given by the enclosing Pixels element's DimensionOrder attribute. Default is the number of IFDs in the TIFF file, unless an IFD is specified, in which case the default is 1. [units:none]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element TiffData / UUID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This must be used when the IFDs are located in another file.
Note: It is permissible for this to be self referential.
Diagram
Diagram ome_xsd.tmp#UniversallyUniqueIdentifier ome_xsd.tmp#TiffData_TiffData_UUID_FileName
Type extension of UniversallyUniqueIdentifier
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs 1
Attributes
QName Type Use Annotation
FileName xsd:string optional
This can be used when the IFDs are located in another file.
The / (forward slash) is used as the path separator.
A relative path is recommended. However an absolute path can be specified.
Default is to use the file the ome-xml data has been pulled from.
Note: It is permissible for this to be self referential. The file image1.tiff
may contain ome-xml data that has FilePath="image1.tiff" or "./image1.tiff"
Source
<xsd:element name="UUID" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>This must be used when the IFDs are located in another file. Note: It is permissible for this to be self referential.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:simpleContent>
      <xsd:extension base="UniversallyUniqueIdentifier">
        <xsd:attribute name="FileName" use="optional" type="xsd:string">
          <xsd:annotation>
            <xsd:documentation>This can be used when the IFDs are located in another file. The / (forward slash) is used as the path separator. A relative path is recommended. However an absolute path can be specified. Default is to use the file the ome-xml data has been pulled from. Note: It is permissible for this to be self referential. The file image1.tiff may contain ome-xml data that has FilePath="image1.tiff" or "./image1.tiff"</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:extension>
    </xsd:simpleContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element MetadataOnly
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This place holder means there is on pixel data in this file.
Diagram
Diagram
Used by
Element Pixels
Source
<xsd:element name="MetadataOnly">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>MetadataOnlyMarkers</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This place holder means there is on pixel data in this file.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Plane
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The Plane object holds microscope stage and image timing data
for a given channel/z-section/timepoint.
Diagram
Diagram ome_xsd.tmp#Plane_TheZ ome_xsd.tmp#Plane_TheT ome_xsd.tmp#Plane_TheC ome_xsd.tmp#Plane_DeltaT ome_xsd.tmp#Plane_ExposureTime ome_xsd.tmp#Plane_PositionX ome_xsd.tmp#Plane_PositionY ome_xsd.tmp#Plane_PositionZ ome_xsd.tmp#Plane_HashSHA1 SA_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element Pixels
Model
Children AnnotationRef, HashSHA1
Instance
<Plane DeltaT="" ExposureTime="" PositionX="" PositionY="" PositionZ="" TheC="" TheT="" TheZ="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2012-06" xmlns:SA="http://www.openmicroscopy.org/Schemas/SA/2012-06">
  <HashSHA1>{1,1}</HashSHA1>
  <SA:AnnotationRef ID="">{0,unbounded}</SA:AnnotationRef>
</Plane>
Attributes
QName Type Use Annotation
DeltaT xsd:float optional
Units are seconds since the beginning of the experiment [s]
ExposureTime xsd:float optional
Units are seconds [s]
PositionX xsd:float optional
The X position of the stage. [units are in the microscope reference frame]
PositionY xsd:float optional
The Y position of the stage. [units are in the microscope reference frame]
PositionZ xsd:float optional
The Z position of the stage. [units are in the microscope reference frame]
TheC NonNegativeInt required
The channel this plane is for. [units:none]
This is numbered from 0.
TheT NonNegativeInt required
The timepoint this plane is for. [units:none]
This is numbered from 0.
TheZ NonNegativeInt required
The Z-section this plane is for. [units:none]
This is numbered from 0.
Source
<xsd:element name="Plane">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <plural>Planes</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Plane object holds microscope stage and image timing data for a given channel/z-section/timepoint.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:choice minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>This optional element is a hash of the plane's image data. It is a choice between all the support hash types. Currently the only method supported is SHA1.</xsd:documentation>
        </xsd:annotation>
        <xsd:element name="HashSHA1" type="Hex40" minOccurs="1" maxOccurs="1"/>
      </xsd:choice>
      <xsd:element ref="SA:AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu>
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="TheZ" use="required" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>The Z-section this plane is for. [units:none] This is numbered from 0.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="TheT" use="required" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>The timepoint this plane is for. [units:none] This is numbered from 0.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="TheC" use="required" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>The channel this plane is for. [units:none] This is numbered from 0.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="DeltaT" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>Units are seconds since the beginning of the experiment [s]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ExposureTime" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>Units are seconds [s]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PositionX" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The X position of the stage. [units are in the microscope reference frame]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PositionY" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The Y position of the stage. [units are in the microscope reference frame]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PositionZ" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The Z position of the stage. [units are in the microscope reference frame]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element Plane / HashSHA1
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Hex40
Type Hex40
Properties
content simple
minOccurs 1
maxOccurs 1
Facets
length 20
Source
<xsd:element name="HashSHA1" type="Hex40" minOccurs="1" maxOccurs="1"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element MicrobeamManipulationRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#MicrobeamManipulationRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Image
Attributes
QName Type Use
ID MicrobeamManipulationID required
Source
<xsd:element name="MicrobeamManipulationRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="MicrobeamManipulationID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element OME / BinaryOnly
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Pointer to an external metadata file. If this element is
present, then no other metadata may be present in this file,
i.e. this file is a place-holder.
Diagram
Diagram ome_xsd.tmp#OME_OME_BinaryOnly_MetadataFile ome_xsd.tmp#OME_OME_BinaryOnly_UUID
Properties
content complex
minOccurs 1
maxOccurs 1
Attributes
QName Type Use Annotation
MetadataFile xsd:string required
Filename of the OME-XML metadata file for this
binary data. If the file cannot be found, a search can be
performed based on the UUID.
UUID UniversallyUniqueIdentifier required
The unique identifier of another OME-XML block
whose metadata describes the binary data in this file. This UUID
is considered authoritative regardless of mismatches in the
filename.
Source
<xsd:element name="BinaryOnly" minOccurs="1" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>Pointer to an external metadata file. If this element is present, then no other metadata may be present in this file, i.e. this file is a place-holder.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:attribute name="MetadataFile" type="xsd:string" use="required">
      <xsd:annotation>
        <xsd:documentation>Filename of the OME-XML metadata file for this binary data. If the file cannot be found, a search can be performed based on the UUID.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="UUID" type="UniversallyUniqueIdentifier" use="required">
      <xsd:annotation>
        <xsd:documentation>The unique identifier of another OME-XML block whose metadata describes the binary data in this file. This UUID is considered authoritative regardless of mismatches in the filename.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ChannelRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ChannelRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Attributes
QName Type Use
ID ChannelID required
Source
<xsd:element name="ChannelRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ChannelID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Element ProjectRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
There may be one or more of these in a Dataset.
This empty element has a required Project ID attribute that refers to Projects defined within the OME element.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ProjectRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Attributes
QName Type Use
ID ProjectID required
Source
<xsd:element name="ProjectRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>There may be one or more of these in a Dataset. This empty element has a required Project ID attribute that refers to Projects defined within the OME element.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ProjectID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Complex Type Reference
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Reference is an empty complex type that is contained and extended by all the *Ref elements and also the Settings Complex Type
Each *Ref element defines an attribute named ID of simple type *ID and no other information
Each simple type *ID is restricted to the base type LSID with an appropriate pattern
Diagram
Diagram
Used by
Source
<xsd:complexType name="Reference">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <abstract/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Reference is an empty complex type that is contained and extended by all the *Ref elements and also the Settings Complex Type Each *Ref element defines an attribute named ID of simple type *ID and no other information Each simple type *ID is restricted to the base type LSID with an appropriate pattern</xsd:documentation>
  </xsd:annotation>
</xsd:complexType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ExperimenterID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experimenter:\S+)|(Experimenter:\S+))
Used by
Source
<xsd:simpleType name="ExperimenterID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experimenter:\S+)|(Experimenter:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type LSID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Either LSID or internal consistent IDs for the file
See: http://www.openmicroscopy.org/site/support/file-formats/working-with-ome-xml/id-and-lsid
Diagram
Diagram
Type restriction of xsd:string
Facets
pattern (urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)
Used by
Source
<xsd:simpleType name="LSID">
  <xsd:annotation>
    <xsd:documentation>Either LSID or internal consistent IDs for the file See: http://www.openmicroscopy.org/site/support/file-formats/working-with-ome-xml/id-and-lsid</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:string">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ExperimenterGroupID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:ExperimenterGroup:\S+)|(ExperimenterGroup:\S+))
Used by
Source
<xsd:simpleType name="ExperimenterGroupID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:ExperimenterGroup:\S+)|(ExperimenterGroup:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type DatasetID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dataset:\S+)|(Dataset:\S+))
Used by
Source
<xsd:simpleType name="DatasetID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dataset:\S+)|(Dataset:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ProjectID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Project:\S+)|(Project:\S+))
Used by
Source
<xsd:simpleType name="ProjectID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Project:\S+)|(Project:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ImageID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Image:\S+)|(Image:\S+))
Used by
Attributes Image/@ID, ImageRef/@ID
Source
<xsd:simpleType name="ImageID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Image:\S+)|(Image:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Complex Type Settings
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Settings is an empty complex type that is contained and extended by all the *Settings elements
Each *Settings element defines an attribute named ID of simple type *ID and the other information that is needed.
Each simple type *ID is restricted to the base type LSID with an appropriate pattern
Diagram
Diagram ome_xsd.tmp#Reference
Type extension of Reference
Type hierarchy
Used by
Source
<xsd:complexType name="Settings">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <abstract/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Settings is an empty complex type that is contained and extended by all the *Settings elements Each *Settings element defines an attribute named ID of simple type *ID and the other information that is needed. Each simple type *ID is restricted to the base type LSID with an appropriate pattern</xsd:documentation>
  </xsd:annotation>
  <xsd:complexContent>
    <xsd:extension base="Reference">
    </xsd:extension>
  </xsd:complexContent>
</xsd:complexType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type LightSourceID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:LightSource:\S+)|(LightSource:\S+))
Used by
Source
<xsd:simpleType name="LightSourceID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:LightSource:\S+)|(LightSource:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type PercentFraction
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A simple type that restricts the value to a float between 0 and 1 (inclusive).
Diagram
Diagram
Type restriction of xsd:float
Facets
maxInclusive 1.0
minInclusive 0.0
Used by
Source
<xsd:simpleType name="PercentFraction">
  <xsd:annotation>
    <xsd:documentation>A simple type that restricts the value to a float between 0 and 1 (inclusive).</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:float">
    <xsd:maxInclusive value="1.0"/>
    <xsd:minInclusive value="0.0"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type PositiveInt
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A simple type that restricts the value to an integer between 1 and 2,147,483,647 (inclusive).
Diagram
Diagram
Type restriction of xsd:int
Facets
minInclusive 1
Used by
Source
<xsd:simpleType name="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>A simple type that restricts the value to an integer between 1 and 2,147,483,647 (inclusive).</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:int">
    <xsd:minInclusive value="1"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type MicrobeamManipulationID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:MicrobeamManipulation:\S+)|(MicrobeamManipulation:\S+))
Used by
Source
<xsd:simpleType name="MicrobeamManipulationID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:MicrobeamManipulation:\S+)|(MicrobeamManipulation:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ExperimentID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experiment:\S+)|(Experiment:\S+))
Used by
Source
<xsd:simpleType name="ExperimentID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experiment:\S+)|(Experiment:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type NonNegativeInt
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A simple type that restricts the value to an integer between 0 and 2,147,483,647 (inclusive).
Diagram
Diagram
Type restriction of xsd:int
Facets
minInclusive 0
Used by
Source
<xsd:simpleType name="NonNegativeInt">
  <xsd:annotation>
    <xsd:documentation>A simple type that restricts the value to an integer between 0 and 2,147,483,647 (inclusive).</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:int">
    <xsd:minInclusive value="0"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type Color
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A simple type that identifies itself as a Color, the value is an integer between -2,147,483,648 and 2,147,483,647 (inclusive).
The value is a signed 32 bit encoding of RGBA so "-1" is #FFFFFFFF or solid white.
NOTE: Prior to the 2012-06 schema the default values were incorrect and produced a transparent red not solid white.
Diagram
Diagram
Type xsd:int
Used by
Source
<xsd:simpleType name="Color">
  <xsd:annotation>
    <xsd:documentation>A simple type that identifies itself as a Color, the value is an integer between -2,147,483,648 and 2,147,483,647 (inclusive). The value is a signed 32 bit encoding of RGBA so "-1" is #FFFFFFFF or solid white. NOTE: Prior to the 2012-06 schema the default values were incorrect and produced a transparent red not solid white.</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:int">
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Complex Type ManufacturerSpec
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This is the base from which many microscope components are extended. E.g Objective, Filter etc.
Provides attributes for recording common properties of these components such as Manufacturer name, Model etc,
all of which are optional.
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber
Used by
Attributes
QName Type Use Annotation
LotNumber xsd:string optional
The lot number of the component. [plain text string]
Manufacturer xsd:string optional
The manufacturer of the component. [plain text string]
Model xsd:string optional
The Model of the component. [plain text string]
SerialNumber xsd:string optional
The serial number of the component. [plain text string]
Source
<xsd:complexType name="ManufacturerSpec">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <abstract/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This is the base from which many microscope components are extended. E.g Objective, Filter etc. Provides attributes for recording common properties of these components such as Manufacturer name, Model etc, all of which are optional.</xsd:documentation>
  </xsd:annotation>
  <xsd:attribute name="Manufacturer" use="optional" type="xsd:string">
    <xsd:annotation>
      <xsd:documentation>The manufacturer of the component. [plain text string]</xsd:documentation>
    </xsd:annotation>
  </xsd:attribute>
  <xsd:attribute name="Model" use="optional" type="xsd:string">
    <xsd:annotation>
      <xsd:documentation>The Model of the component. [plain text string]</xsd:documentation>
    </xsd:annotation>
  </xsd:attribute>
  <xsd:attribute name="SerialNumber" use="optional" type="xsd:string">
    <xsd:annotation>
      <xsd:documentation>The serial number of the component. [plain text string]</xsd:documentation>
    </xsd:annotation>
  </xsd:attribute>
  <xsd:attribute name="LotNumber" use="optional" type="xsd:string">
    <xsd:annotation>
      <xsd:documentation>The lot number of the component. [plain text string]</xsd:documentation>
    </xsd:annotation>
  </xsd:attribute>
</xsd:complexType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type DetectorID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Detector:\S+)|(Detector:\S+))
Used by
Source
<xsd:simpleType name="DetectorID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Detector:\S+)|(Detector:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ObjectiveID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Objective:\S+)|(Objective:\S+))
Used by
Source
<xsd:simpleType name="ObjectiveID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Objective:\S+)|(Objective:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Complex Type FilterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterRef_ID
Type extension of Reference
Type hierarchy
Used by
Attributes
QName Type Use
ID FilterID required
Source
<xsd:complexType name="FilterRef">
  <!-- top level definition -->
  <xsd:complexContent>
    <xsd:extension base="Reference">
      <xsd:attribute name="ID" use="required" type="FilterID"/>
    </xsd:extension>
  </xsd:complexContent>
</xsd:complexType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type FilterID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Filter:\S+)|(Filter:\S+))
Used by
Source
<xsd:simpleType name="FilterID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Filter:\S+)|(Filter:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type DichroicID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dichroic:\S+)|(Dichroic:\S+))
Used by
Source
<xsd:simpleType name="DichroicID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dichroic:\S+)|(Dichroic:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type FilterSetID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:FilterSet:\S+)|(FilterSet:\S+))
Used by
Source
<xsd:simpleType name="FilterSetID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:FilterSet:\S+)|(FilterSet:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type InstrumentID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Instrument:\S+)|(Instrument:\S+))
Used by
Source
<xsd:simpleType name="InstrumentID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Instrument:\S+)|(Instrument:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ChannelID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Channel:\S+)|(Channel:\S+))
Used by
Source
<xsd:simpleType name="ChannelID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Channel:\S+)|(Channel:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type NonNegativeLong
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A simple type that restricts the value to an integer between 0 and 9223372036854775807 (inclusive).
Diagram
Diagram
Type restriction of xsd:long
Facets
minInclusive 0
Used by
Source
<xsd:simpleType name="NonNegativeLong">
  <xsd:annotation>
    <xsd:documentation>A simple type that restricts the value to an integer between 0 and 9223372036854775807 (inclusive).</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:long">
    <xsd:minInclusive value="0"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type UniversallyUniqueIdentifier
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
This is a unique ID for the file but does not conform to the ID pattern used in the rest of the file.
The rest of the IDs are either an full LSID or an internal ID which is a string that is simply unique in this file.
As the UniversallyUniqueIdentifier is used from outside this file to identify it having the same ID in another file could cause problems.
A UUID is 32 hexadecimal digits, in 5 groups, 8-4-4-4-12, separated by hyphens
e.g. urn:uuid:3e450fae-b8f2-4d35-aa54-702168b2487f
There are methods to generate these in most modern languages.
http://www.ietf.org/rfc/rfc4122.txt
Diagram
Diagram
Type restriction of xsd:anyURI
Facets
pattern (urn:uuid:[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12})
Used by
Source
<xsd:simpleType name="UniversallyUniqueIdentifier">
  <xsd:annotation>
    <xsd:documentation>This is a unique ID for the file but does not conform to the ID pattern used in the rest of the file. The rest of the IDs are either an full LSID or an internal ID which is a string that is simply unique in this file. As the UniversallyUniqueIdentifier is used from outside this file to identify it having the same ID in another file could cause problems. A UUID is 32 hexadecimal digits, in 5 groups, 8-4-4-4-12, separated by hyphens e.g. urn:uuid:3e450fae-b8f2-4d35-aa54-702168b2487f There are methods to generate these in most modern languages. http://www.ietf.org/rfc/rfc4122.txt</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:anyURI">
    <xsd:pattern value="(urn:uuid:[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12})"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type Hex40
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
Binary contents coded in hexadecimal (20 characters long)
Diagram
Diagram
Type restriction of xsd:hexBinary
Facets
length 20
Used by
Element Plane/HashSHA1
Source
<xsd:simpleType name="Hex40">
  <xsd:annotation>
    <xsd:documentation>Binary contents coded in hexadecimal (20 characters long)</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:hexBinary">
    <xsd:length value="20"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type PixelsID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Pixels:\S+)|(Pixels:\S+))
Used by
Attribute Pixels/@ID
Source
<xsd:simpleType name="PixelsID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Pixels:\S+)|(Pixels:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type PixelType
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
The number size/kind used to represent a pixel
Diagram
Diagram
Type restriction of xsd:string
Facets
enumeration int8
enumeration int16
enumeration int32
enumeration uint8
enumeration uint16
enumeration uint32
enumeration float
enumeration bit
enumeration double
enumeration complex
enumeration double-complex
Used by
Attribute Pixels/@Type
Source
<xsd:simpleType name="PixelType">
  <xsd:annotation>
    <xsd:documentation>The number size/kind used to represent a pixel</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:string">
    <xsd:enumeration value="int8"/>
    <xsd:enumeration value="int16"/>
    <xsd:enumeration value="int32"/>
    <xsd:enumeration value="uint8"/>
    <xsd:enumeration value="uint16"/>
    <xsd:enumeration value="uint32"/>
    <xsd:enumeration value="float"/>
    <xsd:enumeration value="bit"/>
    <xsd:enumeration value="double"/>
    <xsd:enumeration value="complex"/>
    <xsd:enumeration value="double-complex"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type PositiveFloat
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Annotations
A simple type that restricts the value to a float between >0 and max 32-bit float {i.e. (2−2^-23) × 2^27 ≈ 3.4 × 10^38}
Diagram
Diagram
Type restriction of xsd:float
Facets
minExclusive 0.0
Used by
Source
<xsd:simpleType name="PositiveFloat">
  <xsd:annotation>
    <xsd:documentation>A simple type that restricts the value to a float between >0 and max 32-bit float {i.e. (2−2^-23) × 2^27 ≈ 3.4 × 10^38}</xsd:documentation>
  </xsd:annotation>
  <xsd:restriction base="xsd:float">
    <xsd:minExclusive value="0.0"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Simple Type ModuleID
Namespace http://www.openmicroscopy.org/Schemas/OME/2012-06
Diagram
Diagram ome_xsd.tmp#LSID
Type restriction of LSID
Type hierarchy
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Module:\S+)|(Module:\S+))
Source
<xsd:simpleType name="ModuleID">
  <xsd:restriction base="LSID">
    <xsd:pattern value="(urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Module:\S+)|(Module:\S+)"/>
  </xsd:restriction>
</xsd:simpleType>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ExperimenterRef / @ID
Namespace No namespace
Type ExperimenterID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experimenter:\S+)|(Experimenter:\S+))
Used by
Element ExperimenterRef
Source
<xsd:attribute name="ID" use="required" type="ExperimenterID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ExperimenterGroupRef / @ID
Namespace No namespace
Type ExperimenterGroupID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:ExperimenterGroup:\S+)|(ExperimenterGroup:\S+))
Used by
Source
<xsd:attribute name="ID" use="required" type="ExperimenterGroupID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DatasetRef / @ID
Namespace No namespace
Type DatasetID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dataset:\S+)|(Dataset:\S+))
Used by
Element DatasetRef
Source
<xsd:attribute name="ID" use="required" type="DatasetID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Project / @Name
Namespace No namespace
Type xsd:string
Properties
use optional
Used by
Element Project
Source
<xsd:attribute name="Name" use="optional" type="xsd:string"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Project / @ID
Namespace No namespace
Type ProjectID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Project:\S+)|(Project:\S+))
Used by
Element Project
Source
<xsd:attribute name="ID" use="required" type="ProjectID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ImageRef / @ID
Namespace No namespace
Type ImageID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Image:\S+)|(Image:\S+))
Used by
Element ImageRef
Source
<xsd:attribute name="ID" use="required" type="ImageID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Dataset / @Name
Namespace No namespace
Annotations
A name for the dataset that is suitable be presented to the user.
Type xsd:string
Properties
use optional
Used by
Element Dataset
Source
<xsd:attribute name="Name" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>A name for the dataset that is suitable be presented to the user.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Dataset / @ID
Namespace No namespace
Type DatasetID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dataset:\S+)|(Dataset:\S+))
Used by
Element Dataset
Source
<xsd:attribute name="ID" use="required" type="DatasetID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute LightSourceSettings / @ID
Namespace No namespace
Type LightSourceID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:LightSource:\S+)|(LightSource:\S+))
Used by
Source
<xsd:attribute name="ID" use="required" type="LightSourceID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute LightSourceSettings / @Attenuation
Namespace No namespace
Annotations
The Attenuation of the light source [units:none]
A fraction, as a value from 0.0 to 1.0.
Type PercentFraction
Properties
use optional
Facets
maxInclusive 1.0
minInclusive 0.0
Used by
Source
<xsd:attribute name="Attenuation" use="optional" type="PercentFraction">
  <xsd:annotation>
    <xsd:documentation>The Attenuation of the light source [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute LightSourceSettings / @Wavelength
Namespace No namespace
Annotations
The Wavelength of the light source. nanometres[nm]
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Source
<xsd:attribute name="Wavelength" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>The Wavelength of the light source. nanometres[nm]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute MicrobeamManipulation / @ID
Namespace No namespace
Type MicrobeamManipulationID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:MicrobeamManipulation:\S+)|(MicrobeamManipulation:\S+))
Used by
Source
<xsd:attribute name="ID" use="required" type="MicrobeamManipulationID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute MicrobeamManipulation / @Type
Namespace No namespace
Annotations
The type of manipulation performed.
Type list of restriction of xsd:string
Properties
use optional
Used by
Source
<xsd:attribute name="Type" use="optional">
  <xsd:annotation>
    <xsd:documentation>The type of manipulation performed.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:list>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="FRAP"/>
          <!-- Fluorescence recovery after photobleaching -->
          <xsd:enumeration value="FLIP"/>
          <!-- Fluorescence Loss in Photobleaching -->
          <xsd:enumeration value="InverseFRAP"/>
          <!-- iFRAP, inverse FRAP -->
          <xsd:enumeration value="Photoablation"/>
          <xsd:enumeration value="Photoactivation"/>
          <xsd:enumeration value="Uncaging"/>
          <xsd:enumeration value="OpticalTrapping"/>
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:list>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experiment / @Type
Namespace No namespace
Annotations
A term to describe the type of experiment.
Type list of restriction of xsd:string
Properties
use optional
Used by
Element Experiment
Source
<xsd:attribute name="Type" use="optional">
  <xsd:annotation>
    <xsd:documentation>A term to describe the type of experiment.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:list>
      <xsd:simpleType>
        <xsd:restriction base="xsd:string">
          <xsd:enumeration value="FP"/>
          <xsd:enumeration value="FRET"/>
          <!-- Förster resonance energy transfer, also known as fluorescence resonance energy transfer, resonance energy transfer (RET) or electronic energy transfer (EET) -->
          <xsd:enumeration value="TimeLapse"/>
          <!--  Time-lapse microscopy (microphotography, photomicrography) -->
          <xsd:enumeration value="FourDPlus"/>
          <xsd:enumeration value="Screen"/>
          <xsd:enumeration value="Immunocytochemistry"/>
          <xsd:enumeration value="Immunofluorescence"/>
          <xsd:enumeration value="FISH"/>
          <!-- Fluorescent in situ hybridization -->
          <xsd:enumeration value="Electrophysiology"/>
          <xsd:enumeration value="IonImaging"/>
          <xsd:enumeration value="Colocalization"/>
          <xsd:enumeration value="PGIDocumentation"/>
          <xsd:enumeration value="FluorescenceLifetime"/>
          <!-- Fluorescence lifetime imaging (FLIM) -->
          <xsd:enumeration value="SpectralImaging"/>
          <xsd:enumeration value="Photobleaching"/>
          <xsd:enumeration value="SPIM"/>
          <!-- Selective or Single Plane Illumination Microscopy -->
          <xsd:enumeration value="Other"/>
        </xsd:restriction>
      </xsd:simpleType>
    </xsd:list>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experiment / @ID
Namespace No namespace
Type ExperimentID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experiment:\S+)|(Experiment:\S+))
Used by
Element Experiment
Source
<xsd:attribute name="ID" use="required" type="ExperimentID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experimenter / @ID
Namespace No namespace
Type ExperimenterID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experimenter:\S+)|(Experimenter:\S+))
Used by
Element Experimenter
Source
<xsd:attribute name="ID" use="required" type="ExperimenterID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experimenter / @FirstName
Namespace No namespace
Annotations
First name, sometime called christian name or given name or forename. [plain text string]
Type xsd:string
Properties
use optional
Used by
Element Experimenter
Source
<xsd:attribute name="FirstName" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>First name, sometime called christian name or given name or forename. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experimenter / @MiddleName
Namespace No namespace
Annotations
Any other names. [plain text string]
Type xsd:string
Properties
use optional
Used by
Element Experimenter
Source
<xsd:attribute name="MiddleName" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>Any other names. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experimenter / @LastName
Namespace No namespace
Annotations
A person's last name sometimes called surname or family name. [plain text string]
Type xsd:string
Properties
use optional
Used by
Element Experimenter
Source
<xsd:attribute name="LastName" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>A person's last name sometimes called surname or family name. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experimenter / @Email
Namespace No namespace
Annotations
A person's email address. [valid email address as string]
Type xsd:string
Properties
use optional
Used by
Element Experimenter
Source
<xsd:attribute name="Email" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>A person's email address. [valid email address as string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experimenter / @Institution
Namespace No namespace
Annotations
A person's Institution
The organizing structure that people belong to other than groups.  A university, or company, etc.
We do not specify a department element, and do not mean for Institution to be used in this way.
We simply wish to say XXX at YYY.  Where YYY has a better chance of being tied to a geographically fixed location
and of being more recognizable than a group of experimenters. [plain text string]
Type xsd:string
Properties
use optional
Used by
Element Experimenter
Source
<xsd:attribute name="Institution" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>A person's Institution The organizing structure that people belong to other than groups. A university, or company, etc. We do not specify a department element, and do not mean for Institution to be used in this way. We simply wish to say XXX at YYY. Where YYY has a better chance of being tied to a geographically fixed location and of being more recognizable than a group of experimenters. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Experimenter / @UserName
Namespace No namespace
Annotations
This is the username of the experimenter (in a 'unix' or 'database' sense). [plain text string]
Type xsd:string
Properties
use optional
Used by
Element Experimenter
Source
<xsd:attribute name="UserName" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <unique/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This is the username of the experimenter (in a 'unix' or 'database' sense). [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Leader / @ID
Namespace No namespace
Type ExperimenterID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experimenter:\S+)|(Experimenter:\S+))
Used by
Element Leader
Source
<xsd:attribute name="ID" use="required" type="ExperimenterID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ExperimenterGroup / @Name
Namespace No namespace
Type xsd:string
Properties
use optional
Used by
Source
<xsd:attribute name="Name" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu>
        <unique/>
      </xsdfu>
    </xsd:appinfo>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ExperimenterGroup / @ID
Namespace No namespace
Type ExperimenterGroupID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:ExperimenterGroup:\S+)|(ExperimenterGroup:\S+))
Used by
Source
<xsd:attribute name="ID" use="required" type="ExperimenterGroupID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ManufacturerSpec / @Manufacturer
Namespace No namespace
Annotations
The manufacturer of the component. [plain text string]
Type xsd:string
Properties
use optional
Used by
Complex Type ManufacturerSpec
Source
<xsd:attribute name="Manufacturer" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>The manufacturer of the component. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ManufacturerSpec / @Model
Namespace No namespace
Annotations
The Model of the component. [plain text string]
Type xsd:string
Properties
use optional
Used by
Complex Type ManufacturerSpec
Source
<xsd:attribute name="Model" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>The Model of the component. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ManufacturerSpec / @SerialNumber
Namespace No namespace
Annotations
The serial number of the component. [plain text string]
Type xsd:string
Properties
use optional
Used by
Complex Type ManufacturerSpec
Source
<xsd:attribute name="SerialNumber" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>The serial number of the component. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ManufacturerSpec / @LotNumber
Namespace No namespace
Annotations
The lot number of the component. [plain text string]
Type xsd:string
Properties
use optional
Used by
Complex Type ManufacturerSpec
Source
<xsd:attribute name="LotNumber" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>The lot number of the component. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Microscope / @Type
Namespace No namespace
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Upright
enumeration Inverted
enumeration Dissection
enumeration Electrophysiology
enumeration Other
Used by
Element Microscope
Source
<xsd:attribute name="Type" use="optional">
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Upright"/>
      <xsd:enumeration value="Inverted"/>
      <xsd:enumeration value="Dissection"/>
      <xsd:enumeration value="Electrophysiology"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pump / @ID
Namespace No namespace
Type LightSourceID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:LightSource:\S+)|(LightSource:\S+))
Used by
Element Pump
Source
<xsd:attribute name="ID" use="required" type="LightSourceID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @Type
Namespace No namespace
Annotations
Type is the general category of laser.
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Excimer
enumeration Gas
enumeration MetalVapor
enumeration SolidState
enumeration Dye
enumeration Semiconductor
enumeration FreeElectron
enumeration Other
Used by
Element Laser
Source
<xsd:attribute name="Type" use="optional">
  <xsd:annotation>
    <xsd:documentation>Type is the general category of laser.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Excimer"/>
      <xsd:enumeration value="Gas"/>
      <xsd:enumeration value="MetalVapor"/>
      <xsd:enumeration value="SolidState"/>
      <xsd:enumeration value="Dye"/>
      <xsd:enumeration value="Semiconductor"/>
      <xsd:enumeration value="FreeElectron"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @LaserMedium
Namespace No namespace
Annotations
The Medium attribute specifies the actual lasing medium
for a given laser type.
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Cu
enumeration Ag
enumeration ArFl
enumeration ArCl
enumeration KrFl
enumeration KrCl
enumeration XeFl
enumeration XeCl
enumeration XeBr
enumeration N
enumeration Ar
enumeration Kr
enumeration Xe
enumeration HeNe
enumeration HeCd
enumeration CO
enumeration CO2
enumeration H2O
enumeration HFl
enumeration NdGlass
enumeration NdYAG
enumeration ErGlass
enumeration ErYAG
enumeration HoYLF
enumeration HoYAG
enumeration Ruby
enumeration TiSapphire
enumeration Alexandrite
enumeration Rhodamine6G
enumeration CoumarinC30
enumeration GaAs
enumeration GaAlAs
enumeration EMinus
enumeration Other
Used by
Element Laser
Source
<xsd:attribute name="LaserMedium" use="optional">
  <xsd:annotation>
    <xsd:documentation>The Medium attribute specifies the actual lasing medium for a given laser type.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <!-- MetalVaporLaserMedia -->
      <xsd:enumeration value="Cu"/>
      <xsd:enumeration value="Ag"/>
      <!-- ExcimerLaserMedia -->
      <xsd:enumeration value="ArFl"/>
      <xsd:enumeration value="ArCl"/>
      <xsd:enumeration value="KrFl"/>
      <xsd:enumeration value="KrCl"/>
      <xsd:enumeration value="XeFl"/>
      <xsd:enumeration value="XeCl"/>
      <xsd:enumeration value="XeBr"/>
      <!-- GasLaserMedia -->
      <xsd:enumeration value="N"/>
      <xsd:enumeration value="Ar"/>
      <xsd:enumeration value="Kr"/>
      <xsd:enumeration value="Xe"/>
      <xsd:enumeration value="HeNe"/>
      <xsd:enumeration value="HeCd"/>
      <xsd:enumeration value="CO"/>
      <xsd:enumeration value="CO2"/>
      <xsd:enumeration value="H2O"/>
      <xsd:enumeration value="HFl"/>
      <!-- SolidStateLaserMedia -->
      <xsd:enumeration value="NdGlass"/>
      <xsd:enumeration value="NdYAG"/>
      <xsd:enumeration value="ErGlass"/>
      <xsd:enumeration value="ErYAG"/>
      <xsd:enumeration value="HoYLF"/>
      <xsd:enumeration value="HoYAG"/>
      <xsd:enumeration value="Ruby"/>
      <xsd:enumeration value="TiSapphire"/>
      <xsd:enumeration value="Alexandrite"/>
      <!-- DyeLaserMedia -->
      <xsd:enumeration value="Rhodamine6G"/>
      <xsd:enumeration value="CoumarinC30"/>
      <!-- SemiconductorLaserMedia -->
      <xsd:enumeration value="GaAs"/>
      <xsd:enumeration value="GaAlAs"/>
      <!-- FreeElectronLaserMedia -->
      <xsd:enumeration value="EMinus"/>
      <!-- OtherLaserMedia -->
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @Wavelength
Namespace No namespace
Annotations
The Wavelength of the laser in nanometres[nm]
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Element Laser
Source
<xsd:attribute name="Wavelength" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>The Wavelength of the laser in nanometres[nm]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @FrequencyMultiplication
Namespace No namespace
Annotations
FrequencyMultiplication that may be specified. [units:none]
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Element Laser
Source
<xsd:attribute name="FrequencyMultiplication" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>FrequencyMultiplication that may be specified. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @Tuneable
Namespace No namespace
Annotations
Whether or not the laser is Tuneable [flag]
Type xsd:boolean
Properties
use optional
Used by
Element Laser
Source
<xsd:attribute name="Tuneable" use="optional" type="xsd:boolean">
  <xsd:annotation>
    <xsd:documentation>Whether or not the laser is Tuneable [flag]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @Pulse
Namespace No namespace
Annotations
The Pulse mode of the laser.
Type restriction of xsd:string
Properties
use optional
Facets
enumeration CW
enumeration Single
enumeration QSwitched
enumeration Repetitive
enumeration ModeLocked
enumeration Other
Used by
Element Laser
Source
<xsd:attribute name="Pulse" use="optional">
  <xsd:annotation>
    <xsd:documentation>The Pulse mode of the laser.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="CW"/>
      <xsd:enumeration value="Single"/>
      <xsd:enumeration value="QSwitched"/>
      <xsd:enumeration value="Repetitive"/>
      <xsd:enumeration value="ModeLocked"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @PockelCell
Namespace No namespace
Annotations
If true the laser has a PockelCell to rotate the polarization of the beam. [flag]
Type xsd:boolean
Properties
use optional
Used by
Element Laser
Source
<xsd:attribute name="PockelCell" use="optional" type="xsd:boolean">
  <xsd:annotation>
    <xsd:documentation>If true the laser has a PockelCell to rotate the polarization of the beam. [flag]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Laser / @RepetitionRate
Namespace No namespace
Annotations
The is the rate in Hz at which the laser pulses if
the Pulse type is 'Repetitive'. hertz[Hz]
Type xsd:float
Properties
use optional
Used by
Element Laser
Source
<xsd:attribute name="RepetitionRate" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The is the rate in Hz at which the laser pulses if the Pulse type is 'Repetitive'. hertz[Hz]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Filament / @Type
Namespace No namespace
Annotations
The type of filament.
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Incandescent
enumeration Halogen
enumeration Other
Used by
Element Filament
Source
<xsd:attribute name="Type" use="optional">
  <xsd:annotation>
    <xsd:documentation>The type of filament.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Incandescent"/>
      <xsd:enumeration value="Halogen"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Arc / @Type
Namespace No namespace
Annotations
The type of Arc lamp.
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Hg
enumeration Xe
enumeration HgXe
enumeration Other
Used by
Element Arc
Source
<xsd:attribute name="Type" use="optional">
  <xsd:annotation>
    <xsd:documentation>The type of Arc lamp.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Hg"/>
      <xsd:enumeration value="Xe"/>
      <xsd:enumeration value="HgXe"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute LightSource / @ID
Namespace No namespace
Annotations
A LightSource ID must be specified for each light source, and the individual
light sources can be referred to by their LightSource IDs (eg from Channel).
Type LightSourceID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:LightSource:\S+)|(LightSource:\S+))
Used by
Element LightSource
Source
<xsd:attribute name="ID" use="required" type="LightSourceID">
  <xsd:annotation>
    <xsd:documentation>A LightSource ID must be specified for each light source, and the individual light sources can be referred to by their LightSource IDs (eg from Channel).</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute LightSource / @Power
Namespace No namespace
Annotations
The light-source power. units milliwatts[mW]
Type xsd:float
Properties
use optional
Used by
Element LightSource
Source
<xsd:attribute name="Power" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The light-source power. units milliwatts[mW]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Detector / @Gain
Namespace No namespace
Annotations
The Detector Gain for this detector, as a float. [units:none] {used:CCD,EMCCD,PMT}
Type xsd:float
Properties
use optional
Used by
Element Detector
Source
<xsd:attribute name="Gain" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Detector Gain for this detector, as a float. [units:none] {used:CCD,EMCCD,PMT}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Detector / @Voltage
Namespace No namespace
Annotations
The Voltage of the detector (e.g. PMT voltage) as a float. volts[V] {used:PMT}
Type xsd:float
Properties
use optional
Used by
Element Detector
Source
<xsd:attribute name="Voltage" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Voltage of the detector (e.g. PMT voltage) as a float. volts[V] {used:PMT}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Detector / @Offset
Namespace No namespace
Annotations
The Detector Offset. [units:none] {used:CCD,EMCCD}
Type xsd:float
Properties
use optional
Used by
Element Detector
Source
<xsd:attribute name="Offset" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Detector Offset. [units:none] {used:CCD,EMCCD}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Detector / @Zoom
Namespace No namespace
Annotations
The Zoom or "Confocal Zoom" or "Scan Zoom" for a detector. [units:none] {used:PMT}
Type xsd:float
Properties
use optional
Used by
Element Detector
Source
<xsd:attribute name="Zoom" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Zoom or "Confocal Zoom" or "Scan Zoom" for a detector. [units:none] {used:PMT}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Detector / @AmplificationGain
Namespace No namespace
Annotations
Gain applied to the detector signal.
This is the electronic gain (as apposed to the inherent gain) that is set for the detector. [units:none] {used:EMCCD#EMGain}
Type xsd:float
Properties
use optional
Used by
Element Detector
Source
<xsd:attribute name="AmplificationGain" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>Gain applied to the detector signal. This is the electronic gain (as apposed to the inherent gain) that is set for the detector. [units:none] {used:EMCCD#EMGain}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Detector / @ID
Namespace No namespace
Type DetectorID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Detector:\S+)|(Detector:\S+))
Used by
Element Detector
Source
<xsd:attribute name="ID" use="required" type="DetectorID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Detector / @Type
Namespace No namespace
Annotations
The Type of detector. E.g. CCD, PMT, EMCCD etc.
Type restriction of xsd:string
Properties
use optional
Facets
enumeration CCD
enumeration IntensifiedCCD
enumeration AnalogVideo
enumeration PMT
enumeration Photodiode
enumeration Spectroscopy
enumeration LifetimeImaging
enumeration CorrelationSpectroscopy
enumeration FTIR
enumeration EMCCD
enumeration APD
enumeration CMOS
enumeration EBCCD
enumeration Other
Used by
Element Detector
Source
<xsd:attribute name="Type" use="optional">
  <xsd:annotation>
    <xsd:documentation>The Type of detector. E.g. CCD, PMT, EMCCD etc.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="CCD"/>
      <!-- Charge-Coupled Device -->
      <xsd:enumeration value="IntensifiedCCD"/>
      <xsd:enumeration value="AnalogVideo"/>
      <xsd:enumeration value="PMT"/>
      <!-- Photomultiplier tube -->
      <xsd:enumeration value="Photodiode"/>
      <xsd:enumeration value="Spectroscopy"/>
      <xsd:enumeration value="LifetimeImaging"/>
      <xsd:enumeration value="CorrelationSpectroscopy"/>
      <xsd:enumeration value="FTIR"/>
      <!-- Fourier transform infrared spectroscopy -->
      <xsd:enumeration value="EMCCD"/>
      <!-- Electron Multiplying Charge Coupled Device -->
      <xsd:enumeration value="APD"/>
      <!-- Avalanche Photodiode -->
      <xsd:enumeration value="CMOS"/>
      <!-- complementary metal oxide semiconductor -->
      <xsd:enumeration value="EBCCD"/>
      <!-- electron-bombarded charge-coupled device -->
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @ID
Namespace No namespace
Type ObjectiveID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Objective:\S+)|(Objective:\S+))
Used by
Element Objective
Source
<xsd:attribute name="ID" use="required" type="ObjectiveID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @Correction
Namespace No namespace
Annotations
The correction applied to the lens
Type restriction of xsd:string
Properties
use optional
Facets
enumeration UV
enumeration PlanApo
enumeration PlanFluor
enumeration SuperFluor
enumeration VioletCorrected
enumeration Achro
enumeration Achromat
enumeration Fluor
enumeration Fl
enumeration Fluar
enumeration Neofluar
enumeration Fluotar
enumeration Apo
enumeration PlanNeofluar
enumeration Other
Used by
Element Objective
Source
<xsd:attribute name="Correction" use="optional">
  <xsd:annotation>
    <xsd:documentation>The correction applied to the lens</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="UV"/>
      <xsd:enumeration value="PlanApo"/>
      <xsd:enumeration value="PlanFluor"/>
      <xsd:enumeration value="SuperFluor"/>
      <xsd:enumeration value="VioletCorrected"/>
      <xsd:enumeration value="Achro"/>
      <xsd:enumeration value="Achromat"/>
      <xsd:enumeration value="Fluor"/>
      <xsd:enumeration value="Fl"/>
      <xsd:enumeration value="Fluar"/>
      <xsd:enumeration value="Neofluar"/>
      <xsd:enumeration value="Fluotar"/>
      <xsd:enumeration value="Apo"/>
      <xsd:enumeration value="PlanNeofluar"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @Immersion
Namespace No namespace
Annotations
The immersion medium the lens is designed for
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Oil
enumeration Water
enumeration WaterDipping
enumeration Air
enumeration Multi
enumeration Glycerol
enumeration Other
Used by
Element Objective
Source
<xsd:attribute name="Immersion" use="optional">
  <xsd:annotation>
    <xsd:documentation>The immersion medium the lens is designed for</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Oil"/>
      <xsd:enumeration value="Water"/>
      <xsd:enumeration value="WaterDipping"/>
      <xsd:enumeration value="Air"/>
      <xsd:enumeration value="Multi"/>
      <xsd:enumeration value="Glycerol"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @LensNA
Namespace No namespace
Annotations
The numerical aperture of the lens expressed as a floating point (real) number.
Expected range 0.02 - 1.5 [units:none]
Type xsd:float
Properties
use optional
Used by
Element Objective
Source
<xsd:attribute name="LensNA" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The numerical aperture of the lens expressed as a floating point (real) number. Expected range 0.02 - 1.5 [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @NominalMagnification
Namespace No namespace
Annotations
The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. [units:none]
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Element Objective
Source
<xsd:attribute name="NominalMagnification" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @CalibratedMagnification
Namespace No namespace
Annotations
The magnification of the lens as measured by a calibration process- i.e. '59.987' for a 60X lens. [units:none]
Type xsd:float
Properties
use optional
Used by
Element Objective
Source
<xsd:attribute name="CalibratedMagnification" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The magnification of the lens as measured by a calibration process- i.e. '59.987' for a 60X lens. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @WorkingDistance
Namespace No namespace
Annotations
The working distance of the lens expressed as a floating point (real) number. Units are microns[um].
Type xsd:float
Properties
use optional
Used by
Element Objective
Source
<xsd:attribute name="WorkingDistance" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The working distance of the lens expressed as a floating point (real) number. Units are microns[um].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Objective / @Iris
Namespace No namespace
Annotations
Records whether or not the objective was fitted with an Iris. [flag]
Type xsd:boolean
Properties
use optional
Used by
Element Objective
Source
<xsd:attribute name="Iris" use="optional" type="xsd:boolean">
  <xsd:annotation>
    <xsd:documentation>Records whether or not the objective was fitted with an Iris. [flag]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute FilterRef / @ID
Namespace No namespace
Type FilterID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Filter:\S+)|(Filter:\S+))
Used by
Complex Type FilterRef
Source
<xsd:attribute name="ID" use="required" type="FilterID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DichroicRef / @ID
Namespace No namespace
Type DichroicID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dichroic:\S+)|(Dichroic:\S+))
Used by
Element DichroicRef
Source
<xsd:attribute name="ID" use="required" type="DichroicID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute FilterSet / @ID
Namespace No namespace
Type FilterSetID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:FilterSet:\S+)|(FilterSet:\S+))
Used by
Element FilterSet
Source
<xsd:attribute name="ID" use="required" type="FilterSetID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TransmittanceRange / @CutIn
Namespace No namespace
Annotations
CutIn is the wavelength below which there is less than 50% transmittance for a filter. Units: nanometres[nm].
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Source
<xsd:attribute name="CutIn" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>CutIn is the wavelength below which there is less than 50% transmittance for a filter. Units: nanometres[nm].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TransmittanceRange / @CutOut
Namespace No namespace
Annotations
CutOut is the wavelength above which there is less than 50% transmittance for a filter. Units: nanometres[nm].
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Source
<xsd:attribute name="CutOut" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>CutOut is the wavelength above which there is less than 50% transmittance for a filter. Units: nanometres[nm].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TransmittanceRange / @CutInTolerance
Namespace No namespace
Annotations
CutInTolerance Units: nanometres[nm],
Type NonNegativeInt
Properties
use optional
Facets
minInclusive 0
Used by
Source
<xsd:attribute name="CutInTolerance" use="optional" type="NonNegativeInt">
  <xsd:annotation>
    <xsd:documentation>CutInTolerance Units: nanometres[nm],</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TransmittanceRange / @CutOutTolerance
Namespace No namespace
Annotations
CutOutTolerance Units: nanometres[nm],
Type NonNegativeInt
Properties
use optional
Facets
minInclusive 0
Used by
Source
<xsd:attribute name="CutOutTolerance" use="optional" type="NonNegativeInt">
  <xsd:annotation>
    <xsd:documentation>CutOutTolerance Units: nanometres[nm],</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TransmittanceRange / @Transmittance
Namespace No namespace
Annotations
The amount of light the filter transmits at a maximum [units:none]
A fraction, as a value from 0.0 to 1.0.
Type PercentFraction
Properties
use optional
Facets
maxInclusive 1.0
minInclusive 0.0
Used by
Source
<xsd:attribute name="Transmittance" use="optional" type="PercentFraction">
  <xsd:annotation>
    <xsd:documentation>The amount of light the filter transmits at a maximum [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Filter / @Type
Namespace No namespace
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Dichroic
enumeration LongPass
enumeration ShortPass
enumeration BandPass
enumeration MultiPass
enumeration NeutralDensity
enumeration Other
Used by
Element Filter
Source
<xsd:attribute name="Type" use="optional">
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Dichroic"/>
      <xsd:enumeration value="LongPass"/>
      <xsd:enumeration value="ShortPass"/>
      <xsd:enumeration value="BandPass"/>
      <xsd:enumeration value="MultiPass"/>
      <xsd:enumeration value="NeutralDensity"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Filter / @FilterWheel
Namespace No namespace
Annotations
A filter 'wheel' in OME can refer to any arrangement of filters in a filter holder of any shape. It could, for example, be a filter slider. [plain text string]
Type xsd:string
Properties
use optional
Used by
Element Filter
Source
<xsd:attribute name="FilterWheel" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>A filter 'wheel' in OME can refer to any arrangement of filters in a filter holder of any shape. It could, for example, be a filter slider. [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Filter / @ID
Namespace No namespace
Type FilterID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Filter:\S+)|(Filter:\S+))
Used by
Element Filter
Source
<xsd:attribute name="ID" use="required" type="FilterID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Dichroic / @ID
Namespace No namespace
Type DichroicID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Dichroic:\S+)|(Dichroic:\S+))
Used by
Element Dichroic
Source
<xsd:attribute name="ID" use="required" type="DichroicID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Instrument / @ID
Namespace No namespace
Type InstrumentID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Instrument:\S+)|(Instrument:\S+))
Used by
Element Instrument
Source
<xsd:attribute name="ID" use="required" type="InstrumentID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ExperimentRef / @ID
Namespace No namespace
Type ExperimentID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Experiment:\S+)|(Experiment:\S+))
Used by
Element ExperimentRef
Source
<xsd:attribute name="ID" use="required" type="ExperimentID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute InstrumentRef / @ID
Namespace No namespace
Type InstrumentID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Instrument:\S+)|(Instrument:\S+))
Used by
Element InstrumentRef
Source
<xsd:attribute name="ID" use="required" type="InstrumentID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ObjectiveSettings / @ID
Namespace No namespace
Type ObjectiveID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Objective:\S+)|(Objective:\S+))
Used by
Source
<xsd:attribute name="ID" use="required" type="ObjectiveID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ObjectiveSettings / @CorrectionCollar
Namespace No namespace
Annotations
The CorrectionCollar is normally an adjustable ring on the
objective. Each has an arbitrary scale on it so the values
is unit-less. [units:none]
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="CorrectionCollar" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The CorrectionCollar is normally an adjustable ring on the objective. Each has an arbitrary scale on it so the values is unit-less. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ObjectiveSettings / @Medium
Namespace No namespace
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Air
enumeration Oil
enumeration Water
enumeration Glycerol
enumeration Other
Used by
Source
<xsd:attribute name="Medium" use="optional">
  <xsd:simpleType>
    <xsd:annotation>
      <xsd:documentation>A description of a Medium used for the lens. The Medium is the actual immersion medium used in this case.</xsd:documentation>
    </xsd:annotation>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Air"/>
      <xsd:enumeration value="Oil"/>
      <xsd:enumeration value="Water"/>
      <xsd:enumeration value="Glycerol"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ObjectiveSettings / @RefractiveIndex
Namespace No namespace
Annotations
The RefractiveIndex is that of the immersion medium. This is
a ratio so it also unit-less. [units:none]
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="RefractiveIndex" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The RefractiveIndex is that of the immersion medium. This is a ratio so it also unit-less. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ImagingEnvironment / @Temperature
Namespace No namespace
Annotations
The Temperature is in Celsius[C].
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="Temperature" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Temperature is in Celsius[C].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ImagingEnvironment / @AirPressure
Namespace No namespace
Annotations
AirPressure is in millibars[mbar].
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="AirPressure" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>AirPressure is in millibars[mbar].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ImagingEnvironment / @Humidity
Namespace No namespace
Annotations
Humidity around the sample [units:none]
A fraction, as a value from 0.0 to 1.0.
Type PercentFraction
Properties
use optional
Facets
maxInclusive 1.0
minInclusive 0.0
Used by
Source
<xsd:attribute name="Humidity" use="optional" type="PercentFraction">
  <xsd:annotation>
    <xsd:documentation>Humidity around the sample [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ImagingEnvironment / @CO2Percent
Namespace No namespace
Annotations
Carbon Dioxide concentration around the sample [units:none]
A fraction, as a value from 0.0 to 1.0.
Type PercentFraction
Properties
use optional
Facets
maxInclusive 1.0
minInclusive 0.0
Used by
Source
<xsd:attribute name="CO2Percent" use="optional" type="PercentFraction">
  <xsd:annotation>
    <xsd:documentation>Carbon Dioxide concentration around the sample [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute StageLabel / @Name
Namespace No namespace
Type xsd:string
Properties
use required
Used by
Element StageLabel
Source
<xsd:attribute name="Name" use="required" type="xsd:string"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute StageLabel / @X
Namespace No namespace
Annotations
The X position of the stage label. [units are in the microscope reference frame]
Type xsd:float
Properties
use optional
Used by
Element StageLabel
Source
<xsd:attribute name="X" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The X position of the stage label. [units are in the microscope reference frame]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute StageLabel / @Y
Namespace No namespace
Annotations
The Y position of the stage label. [units are in the microscope reference frame]
Type xsd:float
Properties
use optional
Used by
Element StageLabel
Source
<xsd:attribute name="Y" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Y position of the stage label. [units are in the microscope reference frame]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute StageLabel / @Z
Namespace No namespace
Annotations
The Z position of the stage label. [units are in the microscope reference frame]
Type xsd:float
Properties
use optional
Used by
Element StageLabel
Source
<xsd:attribute name="Z" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Z position of the stage label. [units are in the microscope reference frame]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DetectorSettings / @ID
Namespace No namespace
Type DetectorID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Detector:\S+)|(Detector:\S+))
Used by
Source
<xsd:attribute name="ID" use="required" type="DetectorID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DetectorSettings / @Offset
Namespace No namespace
Annotations
The Offset of the detector. [units none] {used:CCD,EMCCD}
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="Offset" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Offset of the detector. [units none] {used:CCD,EMCCD}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DetectorSettings / @Gain
Namespace No namespace
Annotations
The Gain of the detector. [units:none] {used:CCD,EMCCD,PMT}
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="Gain" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Gain of the detector. [units:none] {used:CCD,EMCCD,PMT}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DetectorSettings / @Voltage
Namespace No namespace
Annotations
The Voltage of the detector. volts[V] {used:PMT}
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="Voltage" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Voltage of the detector. volts[V] {used:PMT}</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DetectorSettings / @ReadOutRate
Namespace No namespace
Annotations
The speed at which the detector can count pixels.  {used:CCD,EMCCD}
Units of ReadOutRate is MHz. This is the bytes per second that
can be read from the detector (like a baud rate). megahertz[MHz]
Type xsd:float
Properties
use optional
Used by
Source
<xsd:attribute name="ReadOutRate" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The speed at which the detector can count pixels. {used:CCD,EMCCD} Units of ReadOutRate is MHz. This is the bytes per second that can be read from the detector (like a baud rate). megahertz[MHz]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute DetectorSettings / @Binning
Namespace No namespace
Annotations
Represents the number of pixels that are combined to form larger pixels. {used:CCD,EMCCD}
Type restriction of xsd:string
Properties
use optional
Facets
enumeration 1x1
enumeration 2x2
enumeration 4x4
enumeration 8x8
enumeration Other
Used by
Source
<xsd:attribute name="Binning" use="optional">
  <xsd:annotation>
    <xsd:documentation>Represents the number of pixels that are combined to form larger pixels. {used:CCD,EMCCD}</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="1x1"/>
      <xsd:enumeration value="2x2"/>
      <xsd:enumeration value="4x4"/>
      <xsd:enumeration value="8x8"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute FilterSetRef / @ID
Namespace No namespace
Type FilterSetID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:FilterSet:\S+)|(FilterSet:\S+))
Used by
Element FilterSetRef
Source
<xsd:attribute name="ID" use="required" type="FilterSetID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @ID
Namespace No namespace
Type ChannelID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Channel:\S+)|(Channel:\S+))
Used by
Element Channel
Source
<xsd:attribute name="ID" use="required" type="ChannelID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @Name
Namespace No namespace
Annotations
A name for the channel that is suitable be presented to the user.
Type xsd:string
Properties
use optional
Used by
Element Channel
Source
<xsd:attribute name="Name" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>A name for the channel that is suitable be presented to the user.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @SamplesPerPixel
Namespace No namespace
Annotations
The number of samples the detector takes to form each pixel value.
The SamplesPerPixel attribute is the number of channel components in the logical channel. [units:none]
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Element Channel
Source
<xsd:attribute name="SamplesPerPixel" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>The number of samples the detector takes to form each pixel value. The SamplesPerPixel attribute is the number of channel components in the logical channel. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @IlluminationType
Namespace No namespace
Annotations
The method of illumination used to capture the channel.
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Transmitted
enumeration Epifluorescence
enumeration Oblique
enumeration NonLinear
enumeration Other
Used by
Element Channel
Source
<xsd:attribute name="IlluminationType" use="optional">
  <xsd:annotation>
    <xsd:documentation>The method of illumination used to capture the channel.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Transmitted"/>
      <xsd:enumeration value="Epifluorescence"/>
      <xsd:enumeration value="Oblique"/>
      <xsd:enumeration value="NonLinear"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @PinholeSize
Namespace No namespace
Annotations
The optional PinholeSize attribute allows specifying adjustable
pin hole diameters for confocal microscopes (units microns[um]).
Type xsd:float
Properties
use optional
Used by
Element Channel
Source
<xsd:attribute name="PinholeSize" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The optional PinholeSize attribute allows specifying adjustable pin hole diameters for confocal microscopes (units microns[um]).</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @AcquisitionMode
Namespace No namespace
Annotations
AcquisitionMode describes the type of microscopy performed for each channel
Type restriction of xsd:string
Properties
use optional
Facets
enumeration WideField
enumeration LaserScanningConfocalMicroscopy
enumeration SpinningDiskConfocal
enumeration SlitScanConfocal
enumeration MultiPhotonMicroscopy
enumeration StructuredIllumination
enumeration SingleMoleculeImaging
enumeration TotalInternalReflection
enumeration FluorescenceLifetime
enumeration SpectralImaging
enumeration FluorescenceCorrelationSpectroscopy
enumeration NearFieldScanningOpticalMicroscopy
enumeration SecondHarmonicGenerationImaging
enumeration PALM
enumeration STORM
enumeration STED
enumeration TIRF
enumeration FSM
enumeration LCM
enumeration Other
Used by
Element Channel
Source
<xsd:attribute name="AcquisitionMode" use="optional">
  <xsd:annotation>
    <xsd:documentation>AcquisitionMode describes the type of microscopy performed for each channel</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="WideField"/>
      <xsd:enumeration value="LaserScanningConfocalMicroscopy"/>
      <!-- CLSM or LSCM -->
      <xsd:enumeration value="SpinningDiskConfocal"/>
      <xsd:enumeration value="SlitScanConfocal"/>
      <xsd:enumeration value="MultiPhotonMicroscopy"/>
      <!-- laser scanning multiphoton microscopy (LSMM), two photon microscopy -->
      <xsd:enumeration value="StructuredIllumination"/>
      <xsd:enumeration value="SingleMoleculeImaging"/>
      <xsd:enumeration value="TotalInternalReflection"/>
      <xsd:enumeration value="FluorescenceLifetime"/>
      <xsd:enumeration value="SpectralImaging"/>
      <xsd:enumeration value="FluorescenceCorrelationSpectroscopy"/>
      <xsd:enumeration value="NearFieldScanningOpticalMicroscopy"/>
      <!-- NSOM -->
      <xsd:enumeration value="SecondHarmonicGenerationImaging"/>
      <!-- Second harmonic imaging microscopy (SHIM) -->
      <xsd:enumeration value="PALM"/>
      <!-- photo-activated localization microscopy, photo-activation localization microscopy -->
      <xsd:enumeration value="STORM"/>
      <!-- stochastic optical reconstruction microscopy -->
      <xsd:enumeration value="STED"/>
      <!-- stimulated emission depletion -->
      <xsd:enumeration value="TIRF"/>
      <!-- total internal reflection fluorescence (TIRFM) -->
      <xsd:enumeration value="FSM"/>
      <!-- Fluorescence speckle microscopy -->
      <xsd:enumeration value="LCM"/>
      <!-- Laser capture microdissection -->
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @ContrastMethod
Namespace No namespace
Annotations
ContrastMethod describes the technique used to achieve contrast for each channel
Type restriction of xsd:string
Properties
use optional
Facets
enumeration Brightfield
enumeration Phase
enumeration DIC
enumeration HoffmanModulation
enumeration ObliqueIllumination
enumeration PolarizedLight
enumeration Darkfield
enumeration Fluorescence
enumeration Other
Used by
Element Channel
Source
<xsd:attribute name="ContrastMethod" use="optional">
  <xsd:annotation>
    <xsd:documentation>ContrastMethod describes the technique used to achieve contrast for each channel</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="Brightfield"/>
      <xsd:enumeration value="Phase"/>
      <xsd:enumeration value="DIC"/>
      <!-- Differential Interference Contrast -->
      <xsd:enumeration value="HoffmanModulation"/>
      <!-- Hoffman Modulation Contrast (HMC) -->
      <xsd:enumeration value="ObliqueIllumination"/>
      <xsd:enumeration value="PolarizedLight"/>
      <!-- Polarization Microscopy -->
      <xsd:enumeration value="Darkfield"/>
      <!-- Dark Field Imaging -->
      <xsd:enumeration value="Fluorescence"/>
      <xsd:enumeration value="Other"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @ExcitationWavelength
Namespace No namespace
Annotations
Excitation wavelength of excitation for a particular channel, in nanometres[nm].
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Element Channel
Source
<xsd:attribute name="ExcitationWavelength" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>Excitation wavelength of excitation for a particular channel, in nanometres[nm].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @EmissionWavelength
Namespace No namespace
Annotations
Emission wavelength of excitation for a particular channel, in nanometres[nm].
Type PositiveInt
Properties
use optional
Facets
minInclusive 1
Used by
Element Channel
Source
<xsd:attribute name="EmissionWavelength" use="optional" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>Emission wavelength of excitation for a particular channel, in nanometres[nm].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @Fluor
Namespace No namespace
Annotations
The Fluor attribute is used for fluorescence images.
This is the name of the fluorophore used to produce this channel [plain text string]
Type xsd:string
Properties
use optional
Used by
Element Channel
Source
<xsd:attribute name="Fluor" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>The Fluor attribute is used for fluorescence images. This is the name of the fluorophore used to produce this channel [plain text string]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @NDFilter
Namespace No namespace
Annotations
The NDfilter attribute is used to specify the combined effect of any neutral density filters used. [units optical density expressed as a PercentFraction]
Type xsd:float
Properties
use optional
Used by
Element Channel
Source
<xsd:attribute name="NDFilter" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The NDfilter attribute is used to specify the combined effect of any neutral density filters used. [units optical density expressed as a PercentFraction]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @PockelCellSetting
Namespace No namespace
Annotations
The PockelCellSetting used for this channel. This is the amount the polarization of the beam is rotated by. [units:none]
Type xsd:int
Properties
use optional
Used by
Element Channel
Source
<xsd:attribute name="PockelCellSetting" use="optional" type="xsd:int">
  <xsd:annotation>
    <xsd:documentation>The PockelCellSetting used for this channel. This is the amount the polarization of the beam is rotated by. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Channel / @Color
Namespace No namespace
Annotations
A color used to render this channel - encoded as RGBA
The default value "-1" is #FFFFFFFF so solid white (it is a signed 32 bit value)
NOTE: Prior to the 2012-06 schema the default value was incorrect and produced a transparent red not solid white.
Type Color
Properties
use optional
default -1
Used by
Element Channel
Source
<xsd:attribute name="Color" use="optional" type="Color" default="-1">
  <xsd:annotation>
    <xsd:documentation>A color used to render this channel - encoded as RGBA The default value "-1" is #FFFFFFFF so solid white (it is a signed 32 bit value) NOTE: Prior to the 2012-06 schema the default value was incorrect and produced a transparent red not solid white.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TiffData / UUID / @FileName
Namespace No namespace
Annotations
This can be used when the IFDs are located in another file.
The / (forward slash) is used as the path separator.
A relative path is recommended. However an absolute path can be specified.
Default is to use the file the ome-xml data has been pulled from.
Note: It is permissible for this to be self referential. The file image1.tiff
may contain ome-xml data that has FilePath="image1.tiff" or "./image1.tiff"
Type xsd:string
Properties
use optional
Used by
Element TiffData/UUID
Source
<xsd:attribute name="FileName" use="optional" type="xsd:string">
  <xsd:annotation>
    <xsd:documentation>This can be used when the IFDs are located in another file. The / (forward slash) is used as the path separator. A relative path is recommended. However an absolute path can be specified. Default is to use the file the ome-xml data has been pulled from. Note: It is permissible for this to be self referential. The file image1.tiff may contain ome-xml data that has FilePath="image1.tiff" or "./image1.tiff"</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TiffData / @IFD
Namespace No namespace
Annotations
Gives the IFD(s) for which this element is applicable. Indexed from 0.
Default is 0 (the first IFD). [units:none]
Type NonNegativeInt
Properties
use optional
default 0
Facets
minInclusive 0
Used by
Element TiffData
Source
<xsd:attribute name="IFD" type="NonNegativeInt" default="0" use="optional">
  <xsd:annotation>
    <xsd:documentation>Gives the IFD(s) for which this element is applicable. Indexed from 0. Default is 0 (the first IFD). [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TiffData / @FirstZ
Namespace No namespace
Annotations
Gives the Z position of the image plane at the specified IFD. Indexed from 0.
Default is 0 (the first Z position). [units:none]
Type NonNegativeInt
Properties
use optional
default 0
Facets
minInclusive 0
Used by
Element TiffData
Source
<xsd:attribute name="FirstZ" type="NonNegativeInt" default="0" use="optional">
  <xsd:annotation>
    <xsd:documentation>Gives the Z position of the image plane at the specified IFD. Indexed from 0. Default is 0 (the first Z position). [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TiffData / @FirstT
Namespace No namespace
Annotations
Gives the T position of the image plane at the specified IFD. Indexed from 0.
Default is 0 (the first T position). [units:none]
Type NonNegativeInt
Properties
use optional
default 0
Facets
minInclusive 0
Used by
Element TiffData
Source
<xsd:attribute name="FirstT" type="NonNegativeInt" default="0" use="optional">
  <xsd:annotation>
    <xsd:documentation>Gives the T position of the image plane at the specified IFD. Indexed from 0. Default is 0 (the first T position). [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TiffData / @FirstC
Namespace No namespace
Annotations
Gives the C position of the image plane at the specified IFD. Indexed from 0.
Default is 0 (the first C position). [units:none]
Type NonNegativeInt
Properties
use optional
default 0
Facets
minInclusive 0
Used by
Element TiffData
Source
<xsd:attribute name="FirstC" type="NonNegativeInt" default="0" use="optional">
  <xsd:annotation>
    <xsd:documentation>Gives the C position of the image plane at the specified IFD. Indexed from 0. Default is 0 (the first C position). [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute TiffData / @PlaneCount
Namespace No namespace
Annotations
Gives the number of IFDs affected. Dimension order of IFDs is given by the enclosing
Pixels element's DimensionOrder attribute. Default is the number of IFDs in the TIFF
file, unless an IFD is specified, in which case the default is 1. [units:none]
Type NonNegativeInt
Properties
use optional
Facets
minInclusive 0
Used by
Element TiffData
Source
<xsd:attribute name="PlaneCount" use="optional" type="NonNegativeInt">
  <xsd:annotation>
    <xsd:documentation>Gives the number of IFDs affected. Dimension order of IFDs is given by the enclosing Pixels element's DimensionOrder attribute. Default is the number of IFDs in the TIFF file, unless an IFD is specified, in which case the default is 1. [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @TheZ
Namespace No namespace
Annotations
The Z-section this plane is for. [units:none]
This is numbered from 0.
Type NonNegativeInt
Properties
use required
Facets
minInclusive 0
Used by
Element Plane
Source
<xsd:attribute name="TheZ" use="required" type="NonNegativeInt">
  <xsd:annotation>
    <xsd:documentation>The Z-section this plane is for. [units:none] This is numbered from 0.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @TheT
Namespace No namespace
Annotations
The timepoint this plane is for. [units:none]
This is numbered from 0.
Type NonNegativeInt
Properties
use required
Facets
minInclusive 0
Used by
Element Plane
Source
<xsd:attribute name="TheT" use="required" type="NonNegativeInt">
  <xsd:annotation>
    <xsd:documentation>The timepoint this plane is for. [units:none] This is numbered from 0.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @TheC
Namespace No namespace
Annotations
The channel this plane is for. [units:none]
This is numbered from 0.
Type NonNegativeInt
Properties
use required
Facets
minInclusive 0
Used by
Element Plane
Source
<xsd:attribute name="TheC" use="required" type="NonNegativeInt">
  <xsd:annotation>
    <xsd:documentation>The channel this plane is for. [units:none] This is numbered from 0.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @DeltaT
Namespace No namespace
Annotations
Units are seconds since the beginning of the experiment [s]
Type xsd:float
Properties
use optional
Used by
Element Plane
Source
<xsd:attribute name="DeltaT" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>Units are seconds since the beginning of the experiment [s]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @ExposureTime
Namespace No namespace
Annotations
Units are seconds [s]
Type xsd:float
Properties
use optional
Used by
Element Plane
Source
<xsd:attribute name="ExposureTime" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>Units are seconds [s]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @PositionX
Namespace No namespace
Annotations
The X position of the stage. [units are in the microscope reference frame]
Type xsd:float
Properties
use optional
Used by
Element Plane
Source
<xsd:attribute name="PositionX" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The X position of the stage. [units are in the microscope reference frame]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @PositionY
Namespace No namespace
Annotations
The Y position of the stage. [units are in the microscope reference frame]
Type xsd:float
Properties
use optional
Used by
Element Plane
Source
<xsd:attribute name="PositionY" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Y position of the stage. [units are in the microscope reference frame]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Plane / @PositionZ
Namespace No namespace
Annotations
The Z position of the stage. [units are in the microscope reference frame]
Type xsd:float
Properties
use optional
Used by
Element Plane
Source
<xsd:attribute name="PositionZ" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>The Z position of the stage. [units are in the microscope reference frame]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @ID
Namespace No namespace
Type PixelsID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Pixels:\S+)|(Pixels:\S+))
Used by
Element Pixels
Source
<xsd:attribute name="ID" use="required" type="PixelsID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @DimensionOrder
Namespace No namespace
Annotations
The order in which the individual planes of data are interleaved.
Type restriction of xsd:string
Properties
use required
Facets
enumeration XYZCT
enumeration XYZTC
enumeration XYCTZ
enumeration XYCZT
enumeration XYTCZ
enumeration XYTZC
Used by
Element Pixels
Source
<xsd:attribute name="DimensionOrder" use="required">
  <xsd:annotation>
    <xsd:documentation>The order in which the individual planes of data are interleaved.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:enumeration value="XYZCT"/>
      <xsd:enumeration value="XYZTC"/>
      <xsd:enumeration value="XYCTZ"/>
      <xsd:enumeration value="XYCZT"/>
      <xsd:enumeration value="XYTCZ"/>
      <xsd:enumeration value="XYTZC"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @Type
Namespace No namespace
Annotations
The variable type used to represent each pixel in the image.
Type PixelType
Properties
use required
Facets
enumeration int8
enumeration int16
enumeration int32
enumeration uint8
enumeration uint16
enumeration uint32
enumeration float
enumeration bit
enumeration double
enumeration complex
enumeration double-complex
Used by
Element Pixels
Source
<xsd:attribute name="Type" use="required" type="PixelType">
  <xsd:annotation>
    <xsd:documentation>The variable type used to represent each pixel in the image.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @SizeX
Namespace No namespace
Annotations
Dimensional size of pixel data array [units:none]
Type PositiveInt
Properties
use required
Facets
minInclusive 1
Used by
Element Pixels
Source
<xsd:attribute name="SizeX" use="required" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @SizeY
Namespace No namespace
Annotations
Dimensional size of pixel data array [units:none]
Type PositiveInt
Properties
use required
Facets
minInclusive 1
Used by
Element Pixels
Source
<xsd:attribute name="SizeY" use="required" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @SizeZ
Namespace No namespace
Annotations
Dimensional size of pixel data array [units:none]
Type PositiveInt
Properties
use required
Facets
minInclusive 1
Used by
Element Pixels
Source
<xsd:attribute name="SizeZ" use="required" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @SizeC
Namespace No namespace
Annotations
Dimensional size of pixel data array [units:none]
Type PositiveInt
Properties
use required
Facets
minInclusive 1
Used by
Element Pixels
Source
<xsd:attribute name="SizeC" use="required" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @SizeT
Namespace No namespace
Annotations
Dimensional size of pixel data array [units:none]
Type PositiveInt
Properties
use required
Facets
minInclusive 1
Used by
Element Pixels
Source
<xsd:attribute name="SizeT" use="required" type="PositiveInt">
  <xsd:annotation>
    <xsd:documentation>Dimensional size of pixel data array [units:none]</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @PhysicalSizeX
Namespace No namespace
Annotations
Physical size of a pixel in microns[um].
Type PositiveFloat
Properties
use optional
Facets
minExclusive 0.0
Used by
Element Pixels
Source
<xsd:attribute name="PhysicalSizeX" use="optional" type="PositiveFloat">
  <xsd:annotation>
    <xsd:documentation>Physical size of a pixel in microns[um].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @PhysicalSizeY
Namespace No namespace
Annotations
Physical size of a pixel in microns[um].
Type PositiveFloat
Properties
use optional
Facets
minExclusive 0.0
Used by
Element Pixels
Source
<xsd:attribute name="PhysicalSizeY" use="optional" type="PositiveFloat">
  <xsd:annotation>
    <xsd:documentation>Physical size of a pixel in microns[um].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @PhysicalSizeZ
Namespace No namespace
Annotations
Physical size of a pixel in microns[um].
Type PositiveFloat
Properties
use optional
Facets
minExclusive 0.0
Used by
Element Pixels
Source
<xsd:attribute name="PhysicalSizeZ" use="optional" type="PositiveFloat">
  <xsd:annotation>
    <xsd:documentation>Physical size of a pixel in microns[um].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Pixels / @TimeIncrement
Namespace No namespace
Annotations
TimeIncrement is used for time series that have a global
timing specification instead of per-timepoint timing info.
For example in a video stream.  The unit is seconds[s].
Type xsd:float
Properties
use optional
Used by
Element Pixels
Source
<xsd:attribute name="TimeIncrement" use="optional" type="xsd:float">
  <xsd:annotation>
    <xsd:documentation>TimeIncrement is used for time series that have a global timing specification instead of per-timepoint timing info. For example in a video stream. The unit is seconds[s].</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute MicrobeamManipulationRef / @ID
Namespace No namespace
Type MicrobeamManipulationID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:MicrobeamManipulation:\S+)|(MicrobeamManipulation:\S+))
Used by
Source
<xsd:attribute name="ID" use="required" type="MicrobeamManipulationID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Image / @ID
Namespace No namespace
Type ImageID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Image:\S+)|(Image:\S+))
Used by
Element Image
Source
<xsd:attribute name="ID" use="required" type="ImageID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute Image / @Name
Namespace No namespace
Type xsd:string
Properties
use optional
Used by
Element Image
Source
<xsd:attribute name="Name" use="optional" type="xsd:string"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute OME / BinaryOnly / @MetadataFile
Namespace No namespace
Annotations
Filename of the OME-XML metadata file for this
binary data. If the file cannot be found, a search can be
performed based on the UUID.
Type xsd:string
Properties
use required
Used by
Element OME/BinaryOnly
Source
<xsd:attribute name="MetadataFile" type="xsd:string" use="required">
  <xsd:annotation>
    <xsd:documentation>Filename of the OME-XML metadata file for this binary data. If the file cannot be found, a search can be performed based on the UUID.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute OME / BinaryOnly / @UUID
Namespace No namespace
Annotations
The unique identifier of another OME-XML block
whose metadata describes the binary data in this file. This UUID
is considered authoritative regardless of mismatches in the
filename.
Type UniversallyUniqueIdentifier
Properties
use required
Facets
pattern (urn:uuid:[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12})
Used by
Element OME/BinaryOnly
Source
<xsd:attribute name="UUID" type="UniversallyUniqueIdentifier" use="required">
  <xsd:annotation>
    <xsd:documentation>The unique identifier of another OME-XML block whose metadata describes the binary data in this file. This UUID is considered authoritative regardless of mismatches in the filename.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute OME / @UUID
Namespace No namespace
Annotations
This unique identifier is used to keep track of multi part files.
						It allows the links between files to survive renaming.

						While OPTIONAL in the general case this is REQUIRED in a
						MetadataOnly Companion to a collection of BinaryOnly files.
Type UniversallyUniqueIdentifier
Properties
use optional
Facets
pattern (urn:uuid:[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12})
Used by
Element OME
Source
<xsd:attribute name="UUID" type="UniversallyUniqueIdentifier" use="optional">
  <xsd:annotation>
    <xsd:documentation>This unique identifier is used to keep track of multi part files. It allows the links between files to survive renaming. While OPTIONAL in the general case this is REQUIRED in a MetadataOnly Companion to a collection of BinaryOnly files.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute OME / @Creator
Namespace No namespace
Annotations
This is the name of the creating application of the OME-XML
and preferably its full version.
e.g "CompanyName, SoftwareName, V2.6.3456"
This is optional but we hope it will be set by applications
writing out OME-XML from scratch.
Type xsd:string
Properties
use optional
Used by
Element OME
Source
<xsd:attribute name="Creator" type="xsd:string" use="optional">
  <xsd:annotation>
    <xsd:documentation>This is the name of the creating application of the OME-XML and preferably its full version. e.g "CompanyName, SoftwareName, V2.6.3456" This is optional but we hope it will be set by applications writing out OME-XML from scratch.</xsd:documentation>
  </xsd:annotation>
</xsd:attribute>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ChannelRef / @ID
Namespace No namespace
Type ChannelID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Channel:\S+)|(Channel:\S+))
Used by
Element ChannelRef
Source
<xsd:attribute name="ID" use="required" type="ChannelID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd
Attribute ProjectRef / @ID
Namespace No namespace
Type ProjectID
Type hierarchy
Properties
use required
Facets
pattern ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:\S+:\S+)|(\S+:\S+)) & ((urn:lsid:([\w\-\.]+\.[\w\-\.]+)+:Project:\S+)|(Project:\S+))
Used by
Element ProjectRef
Source
<xsd:attribute name="ID" use="required" type="ProjectID"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2012-06/ome.xsd