Dear forum members,
after upgrading omero server and omero.web to 4.3.1, I can no longer use the web interface. It seems that it fails to find some of the components. I can log on and see home page, but when I click on data, apache returns a "Internal Server Error". Configuration was redone following instruction on omero website. omero config get returns
omero.db.name=omero
omero.db.pass=**************
omero.db.user=omero
omero.web.application_host=http://cedre-5a.med.univ-rennes1.fr:80
omero.web.application_server=fastcgi-tcp
omero.web.debug=True
The OMEROweb.log contains no error (see below) but the apache error log contains issues about incomplete header. Apache2.conf is configure with the auto-generated stanza (during omero web configuration). It seems not a generic apache2 / cgi issue since primer3plus running on the same server still works fine. The computer was freshly restarted to update the system after omero upgrade.
Any help would be very welcome.
Thanks a lot in advance
Best regards
Jacques
======================= Apache2.conf stanza for omero ========================
###
### Stanza for OMERO.web created 2011-07-14 14:58:54.279802
###
FastCGIExternalServer "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" -host 0.0.0.0:4080
<Directory "/usr/local/OMERO.server-Beta-4.3.1/var">
Options -Indexes FollowSymLinks
Order allow,deny
Allow from all
</Directory>
<Directory "/usr/local/OMERO.server-Beta-4.3.1/lib/python/omeroweb/media">
Options -Indexes FollowSymLinks
Order allow,deny
Allow from all
</Directory>
Alias /appmedia /usr/local/OMERO.server-Beta-4.3.1/lib/python/omeroweb/media
Alias / "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi/"
===========================apache2/error.log ===================
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:00 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:03 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:03 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:03 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:03 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:09 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:09 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:40 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:34:40 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:35:10 2011] [error] [client 129.20.155.106] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec), referer: http://cedre-5a/webclient/
[Fri Jul 15 10:35:10 2011] [error] [client 129.20.155.106] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi", referer: http://cedre-5a/webclient/
[Fri Jul 15 10:35:35 2011] [error] [client 127.0.0.1] FastCGI: comm with server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi" aborted: idle timeout (30 sec)
[Fri Jul 15 10:35:35 2011] [error] [client 127.0.0.1] FastCGI: incomplete headers (0 bytes) received from server "/usr/local/OMERO.server-Beta-4.3.1/var/omero.fcgi"
============================ OMEROWeb.log ==================
Fri, 15 Jul 2011 10:36:33 root DEBUG ADMINS = [] (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG APPLICATION_HOST = 'http://cedre-5a.med.univ-rennes1.fr:80' (source:omero.web.application_host)
Fri, 15 Jul 2011 10:36:33 root DEBUG APPLICATION_SERVER = 'fastcgi-tcp' (source:omero.web.application_server)
Fri, 15 Jul 2011 10:36:33 root DEBUG APPLICATION_SERVER_HOST = '0.0.0.0' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG APPLICATION_SERVER_PORT = '4080' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG CACHE_BACKEND = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG DATABASE_ENGINE = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG DATABASE_HOST = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG DATABASE_NAME = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG DATABASE_PASSWORD = '***' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG DATABASE_PORT = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG DATABASE_USER = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG DEBUG = True (source:omero.web.debug)
Fri, 15 Jul 2011 10:36:33 root DEBUG EMAIL_HOST = None (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG EMAIL_HOST_PASSWORD = '***' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG EMAIL_HOST_USER = None (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG EMAIL_PORT = None (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG EMAIL_SUBJECT_PREFIX = '[OMERO.web] ' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG EMAIL_USE_TLS = False (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG LOGDIR = '/usr/local/OMERO.server-Beta-4.3.1/var/log' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG PUBLIC_PASSWORD = '***' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG PUBLIC_USER = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG SEND_BROKEN_LINK_EMAILS = True (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG SERVER_EMAIL = None (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG SERVER_LIST = [[u'localhost', 4064, u'omero']] (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG SESSION_ENGINE = 'django.contrib.sessions.backends.file' (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG USE_EMAN2 = False (source:default)
Fri, 15 Jul 2011 10:36:33 root DEBUG WEBGATEWAY_CACHE = '(unset)' (source:default)
Fri, 15 Jul 2011 10:36:33 omero.util.TempFileManager DEBUG Removing tree: /home/jacques/omero/tmp/omero_jacques/14781
======================================================