I have worked in Emory university (Comprehensive informatics center in medical school) as a student intern.
We are tying to find a tool that enables to support large volume of images because we handle
a quite large volume of images.
first question, What is the maximum size of the image that omero can support ?
second question, I am tying to install omero.server in the cent OS 5.5 and test the functionalities.
finally, I am successful to install omero.server. But, the web system didn't allow me to log in.
It generated error message like 'error: connection not available. please check your user name and password'
also, I am trying to run , 'bin/omero web settings' , to configure web setting. I remembered that I could run this command on 4.1 version of omero server. But, it did not work when I upgraded 4.1 into 4.2 version.
In summary, can I setup 'web setting configuration' again ? If it is, how I can run this command ? (it seems that 4.2 omen do not support this command.. no setting command..)
It would be very helpful if you have any advices or comments.
I attached diagnostics as a reference.
- Code: Select all
OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
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Commands: java -version 1.6.0 (/develop/software/java/jdk1.6.0_21/bin/java -- 2 others)
Commands: python -V 2.4.3 (/usr/bin/python)
Commands: icegridnode --version 3.3.1 (/usr/bin/icegridnode)
Commands: icegridadmin --version 3.3.1 (/usr/bin/icegridadmin)
Commands: psql --version 8.1.22 (/usr/bin/psql)
Server: icegridnode running
Server: Blitz-0 active (pid = 19322, enabled)
Server: DropBox inactive (disabled)
Server: FileServer active (pid = 19349, enabled)
Server: Indexer-0 active (pid = 19352, enabled)
Server: MonitorServer inactive (disabled)
Server: OMERO.Glacier2 active (pid = 19354, enabled)
Server: OMERO.IceStorm active (pid = 19355, enabled)
Server: Processor-0 active (pid = 19357, enabled)
Server: Repository-1 error: node `repo' couldn't be reached:
the node is not active
Server: Tables-0 inactive (disabled)
Server: TestDropBox inactive (enabled)
Log dir: /home/omerouser/omero/omero_dist/var/log exists
Log files: Blitz-0.log 251.0 KB errors=1 warnings=59
Log files: DropBox.log 2.0 KB errors=6 warnings=0
Log files: FileServer.log 0.0 KB
Log files: Indexer-0.log 69.0 KB errors=0 warnings=35
Log files: MonitorServer.log 2.0 KB errors=3 warnings=0
Log files: OMEROweb.log 42.0 KB errors=23 warnings=0
Log files: Processor-0.log 3.0 KB
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 1.0 KB
Log files: master.out 0.0 KB
Log files: Total size 0.37 MB
Parsing Blitz-0.log:[line:76] => Server restarted <=
Parsing Blitz-0.log:[line:302] => Server restarted <=
Parsing Blitz-0.log:[line:436] => Server restarted <=
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=/develop/software/java/jdk1.6.0_21/bin/:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/opt/ibm/db2/V9.7/bin:/usr/lib64/python2.3/site-packages/Ice/
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO data dir: '/OMERO' Exists? True Is writable? True
OMERO.web status... DEVELOPMENT: You will have to check status by hand