Here is the output from bin/omero admin diagnostics:
- Code: Select all
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OMERO Diagnostics Beta4.2.1-r8614-Beta4.2-b41
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Commands: java -version 1.6.0 (/usr/java/jdk1.6.0_21/bin/java -- 2 others)
Commands: python -V 2.6.5 (/opt/python/bin/python -- 2 others)
Commands: icegridnode --version 3.3.1 (/opt/Ice-3.3.1/bin/icegridnode)
Commands: icegridadmin --version 3.3.1 (/opt/Ice-3.3.1/bin/icegridadmin)
Commands: psql --version 8.1.21 (/usr/bin/psql)
Server: icegridnode running
Server: Blitz-0 inactive (disabled)
Server: DropBox inactive (disabled)
Server: FileServer active (pid = 29247, enabled)
Server: Indexer-0 inactive (disabled)
Server: MonitorServer inactive (disabled)
Server: OMERO.Glacier2 active (pid = 29252, enabled)
Server: OMERO.IceStorm active (pid = 29263, enabled)
Server: Processor-0 activating (enabled)
Server: Repository-1 error: node `repo' couldn't be reached:
the node is not active
Server: Tables-0 inactive (disabled)
Server: TestDropBox inactive (enabled)
Log dir: /var/home/omero/omero/var/log exists
Log files: Blitz-0.log 22.0 MB errors=1084 warnings=10619
Log files: Blitz-0.log.1 512.0 MB errors=119 warnings=237
Log files: Blitz-0.log.2 512.0 MB errors=31 warnings=50
Log files: Blitz-0.log.3 512.0 MB errors=122 warnings=147
Log files: Blitz-0.log.4 512.0 MB errors=24 warnings=35
Log files: Blitz-0.log.5 512.0 MB errors=89 warnings=154
Log files: Blitz-0.log.6 512.0 MB errors=40 warnings=54
Log files: Blitz-0.log.7 512.0 MB errors=28 warnings=39
Log files: Blitz-0.log.8 512.0 MB errors=1423 warnings=1530
Log files: Blitz-0.log.9 512.0 MB errors=8706 warnings=8738
Log files: DropBox.log 1.0 KB errors=4 warnings=0
Log files: FileServer.log 0.0 KB
Log files: Indexer-0.log 7.0 MB errors=363 warnings=3098
Log files: MonitorServer.log 1.0 KB errors=2 warnings=0
Log files: OMEROweb-DEBUG.log 18.0 KB errors=2 warnings=1
Log files: OMEROweb.log 1.0 MB errors=3306 warnings=27
Log files: Processor-0.log 3.0 MB errors=973 warnings=6811
Log files: Processor-0.log.1 4.0 MB errors=1394 warnings=9758
Log files: Processor-0.log.2 4.0 MB errors=1394 warnings=9758
Log files: Processor-0.log.3 4.0 MB errors=1394 warnings=9757
Log files: Processor-0.log.4 4.0 MB errors=425 warnings=6149
Log files: Processor-0.log.5 4.0 MB
Log files: Processor-0.log.6 4.0 MB
Log files: Processor-0.log.7 4.0 MB
Log files: Processor-0.log.8 4.0 MB errors=0 warnings=20
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 3.0 KB
Log files: master.out 0.0 KB
Log files: Total size 4682.53 MB
Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:PATH=/usr/java/jdk1.6.0_21/bin/:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/java/jdk1.6.0_21/bin/:/opt/python/bin:/opt/Ice-3.3.1/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/root/bin:/root/bin
Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=/opt/python/lib::/usr/local/samba/lib:/usr/local/lib
Environment:DYLD_LIBRARY_PATH=(unset)
OMERO data dir: '/ext/omero' Exists? True Is writable? True
OMERO.web status... [RUNNING] (PID 12136)
Please let me know what else you need to help diagnose our issue.
