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omero5-rc2 and FiJi [solved]

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omero5-rc2 and FiJi [solved]

Postby stefanm » Fri Feb 28, 2014 4:10 pm

Hello,

I can login to a freshly installed Omero5-rc2 Server via Omero-insight (or any other standalone client) but when I try to use the respective FiJi plugin (freshly installed FiJi and updated according to this installation guide using OMERO.insight-ij-5.0.0-rc2-ice35-b14) I can log in to the server, select an image and when I select "View in ImageJ" I get the following error:

Code: Select all
loci.common.ReflectException: java.lang.ClassNotFoundException: loci.ome.io.OmeroReader
   at loci.common.ReflectedUniverse.exec(ReflectedUniverse.java:125)
   at loci.plugins.in.ImportProcess.createBaseReader(ImportProcess.java:610)
   at loci.plugins.in.ImportProcess.initializeReader(ImportProcess.java:469)
   at loci.plugins.in.ImportProcess.execute(ImportProcess.java:139)
   at loci.plugins.in.Importer.showDialogs(Importer.java:141)
   at loci.plugins.in.Importer.run(Importer.java:79)
   at loci.plugins.LociImporter.run(LociImporter.java:81)
   at ij.IJ.runUserPlugIn(IJ.java:199)
   at ij.IJ.runPlugIn(IJ.java:163)
   at ij.IJ.runPlugIn(IJ.java:152)
.....

about LOCI plugins gives me
Code: Select all
LOCI Plugins for ImageJ revision 786e6c, built 14 February 2014
and the expected Bioformats and Data Browser information.

However, looking into the LOCI plugin configuration various OME/OMERO related Java-Libraries are marked as missing:

Code: Select all
OME I/O
OME Notes
OME plugins
OME-Java API
OMERO Client
OMERO Importer


Any idea what I have missed out? I fear it is something very stupid and obvious.

Cheers & thanks in advance,
Stefan
Last edited by stefanm on Wed Mar 19, 2014 8:02 am, edited 1 time in total.
stefanm
 
Posts: 13
Joined: Fri Feb 28, 2014 3:20 pm
Location: Germany

Re: omero5-rc2 and FiJi

Postby stefanm » Fri Feb 28, 2014 4:31 pm

I've just noticed that while I have been busy with other things on Monday OMERO 5 was finally released. I will have a go at that one.

Stefan
stefanm
 
Posts: 13
Joined: Fri Feb 28, 2014 3:20 pm
Location: Germany

Re: omero5-rc2 and FiJi

Postby stefanm » Fri Feb 28, 2014 5:24 pm

As I suspected, it was something stupid and obvious. Installing the final version 5.0.0 was a breeze and solved everything....

Sorry for the noise.
Stefan
stefanm
 
Posts: 13
Joined: Fri Feb 28, 2014 3:20 pm
Location: Germany


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