Hi,
I am on the way for tiffinfo and tiffutil.
I can upload the file to a (s)ftp server if you wish...
Best
Jacques
toedling wrote:Hello,
we have observed the same issue with images imported using version 4.3.0. After downloading the latest client version 4.3.2 (build 1835), the problem seems to be solved for TIFF images, i.e. now we get a thumbnail and can render them.
However, the problem persists for imported JPEG and PNG files, meaning those still cannot be rendered! I can supply example images if desired. Here is the excerpt of the INSIGHT log file for the import process:
2011-08-09 16:00:27,113 INFO [ ome.formats.importer.ImportConfig] ( Thread-54) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2011-08-09 16:00:27,113 INFO [ ome.formats.importer.ImportConfig] ( Thread-54) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2011-08-09 16:00:27,149 WARN [ ome.formats.importer.ImportLibrary] ( Thread-54) Pre 4.3.2 server or empty omero.pixeldata.fs_lite_readers, using hard coded readers!
2011-08-09 16:00:27,177 WARN [ ome.formats.importer.ImportLibrary] ( Thread-54) Pre 4.3.2 server or empty missing omero.pixeldata.max_plane_width, using hard coded maximum plane width!
2011-08-09 16:00:27,204 WARN [ ome.formats.importer.ImportLibrary] ( Thread-54) Pre 4.3.2 server or empty missing omero.pixeldata.max_plane_height, using hard coded maximum plane height!
2011-08-09 16:00:28,084 INFO [ ome.formats.importer.ImportLibrary] ( Thread-54) Big image, enabling metadata only and archiving.
2011-08-09 16:00:28,084 INFO [ ome.formats.importer.ImportLibrary] ( Thread-54) File format: Animated PNG
2011-08-09 16:00:28,084 INFO [ ome.formats.importer.ImportLibrary] ( Thread-54) Base reader: loci.formats.in.APNGReader
2011-08-09 16:00:28,084 INFO [ ome.formats.importer.ImportLibrary] ( Thread-54) Metadata only import? false
2011-08-09 16:00:28,084 INFO [ ome.formats.importer.ImportLibrary] ( Thread-54) Archiving enabled? true
2011-08-09 16:00:28,084 INFO [ ome.formats.importer.ImportLibrary] ( Thread-54) Container metadata only import? true
2011-08-09 16:00:28,084 INFO [ ome.formats.importer.ImportLibrary] ( Thread-54) Reader is not of HCS domain, use metafile: true
2011-08-09 16:00:28,093 WARN [ ome.formats.model.ReferenceProcessor] ( Thread-54) Unknown target class for LSID: Image:0
Let me know if you need any further information regarding this bug.
Cheers,
Joern
jacques2020 wrote:Hi,
I tried Melissa suggestion about the importer. I thus used this new importer without modifying anything on server side (was that the idea you suggested?) and it somewhat fixed the issue. Indeed, images are uploaded, preview generated, etc... but it takes a dreadfully long time. About 4 hours for a 2 GB tiff containing about 4000 frames. This is typically 10 times longer than what I experienced with 4.2.2. The importer and the server runs on the same computer. Did I missed something?
By the way, the bug into link (http://qa.openmicroscopy.org.uk/qa/feedback/3905) is different from the one in this topic and was triggered using small tiff file by an other user of my server. However, that's great that you could fix it. Thanks a lot!
Any suggestion about the importer of large tiff file would be welcome
Thank you very much for your help
Best
JAcques
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