omero 5.4 installation issues

[mayav]

Website Administrator
Something has triggered missing webpage on your website. This is the default 404 error page for nginx that is distributed with Fedora. It is located /usr/share/nginx/html/404.html

You should customize this error page for your own site or edit the error_page directive in the nginx configuration file /etc/nginx/nginx.conf.

[mayav]

Website Administrator
Something has triggered missing webpage on your website. This is the default 404 error page for nginx that is distributed with Fedora. It is located /usr/share/nginx/html/404.html

You should customize this error page for your own site or edit the error_page directive in the nginx configuration file /etc/nginx/nginx.conf.

[kennethgillen]

Thanks,

So in this case it doesn't look like NGINX configured correctly to serve OMEROweb.

You haven't progressed to "Configure and create the NGINX OMERO configuration file:"?

Is this a fresh install from scratch, or were you upgrading your older OMERO server?

Thanks,

Kenny

[mayav]

So in this case it doesn't look like NGINX configured correctly to serve OMEROweb.


I followed this url help doc https://docs.openmicroscopy.org/omero/5 ... ce3.6.html


You haven't progressed to "Configure and create the NGINX OMERO configuration file:"?

Kindly send the help doc url how to configure the NGINX OMERO configuration file

Is this a fresh install from scratch, or were you upgrading your older OMERO server?

Fresh Installation Cent OS 7

Kindly send help doc url how and where to edit and config the OMERO more memory.


Thanks

[kennethgillen]

Hi Mayav,

Kindly send the help doc url how to configure the NGINX OMERO configuration file

NGINX config is the next step in the installation instructions you are already following: after installing the prerequisites which you were running as root, rather than as the OMERO system user as stated in the doc.

It looks like a mistake in the doc, which we'll correct with the next release of the docs. The following should be run as root - as you have already done:

root# pip install -r OMERO.server/share/web/requirements-py27.txt

You can then continue, but as the OMERO operating system user, not root, from "Configure and create the NGINX OMERO configuration file:"

Kindly send help doc url how and where to edit and config the OMERO more memory.

The memory settings config: https://docs.openmicroscopy.org/omero/5 ... y-settings

[mayav]

And one more issue in doc is given below

OMERO.server/bin/omero config set omero.data.dir "OMERO_DATA_DIR"
ERROR:omero.gateway:No Pillow installed, line plots and split channel will fail!

[mayav]

Hi

Can I proceed with fresh installation with the doc you given(attached below) or can i install older version ?

Current Version

https://docs.openmicroscopy.org/omero/5 ... ice36.html
https://docs.openmicroscopy.org/omero/5 ... ce3.6.html

Older Version

https://docs.openmicroscopy.org/omero/5 ... ntos7.html

[kennethgillen]

Hi

Can I proceed with fresh installation with the doc you given(attached below) or can i install older version ?

Current Version

https://docs.openmicroscopy.org/omero/5 ... ice36.html
https://docs.openmicroscopy.org/omero/5 ... ce3.6.html

Hi,

Yes, you can continue following the 5.4.0 install docs in your fresh installation, keeping in mind the change required that we've already discussed here, i.e. that you ran `pip install` as root - which is correct, if you're following those walkthroughs. That's the only change to the process compared to what's in the docs that we currently know of.

We would not recommend installing an older version than 5.4.0, or following the older docs.

The rest of the 5.4.0 docs should be correct, and if you have other issues, please let us know, and we can work through them.

On your pillow issue:

As root:

Code: Select all

[root@server ~]# pip freeze | grep -i pillow

As your OMERO o.s. user:

Code: Select all

bash-4.2$  pip freeze | grep -i pillow

This will tell you if Pillow is installed (the output should be like "Pillow==2.0.0"). It should have been installed by the following, which we were already discussing:

[root@server ~]# pip install -r OMERO.server/share/web/requirements-py27.txt