Dundee: Kenny, Mark, Balaji, Simon, Will, Jean-Marie, Riad, Petr, Jason, June,
Remote: Josh, Seb, Melissa, Chris, Eleanor, Dom, David, Emil
Start: 2:00 pm
(2-3 minutes each)
BF release 5.7.1 - last PRs opened. Release tomorrow.
5.7.1 will be in OMERO 5.4.0
Improves handling of large XML in ome.tiff
Readers and deps changes need reviewing, especially wrt OMERO
(don’t want to change memoization after 5.4.0 release)
Getting lots of different file formats
Prod 43 blockers fixed
Tackle various new formats SPIM etc for 44.
Mass Spec “Metaspace” images. Using their api to read images
FLIM-FRET data coming… “IJ doesn’t read these correctly.”
BDV format .hdf5 and .xml files. Not versioned, no spec.
JM: Don’t display ‘modulo’ images in web yet.
Balaji: working on integration tests for notebooks
Some tests are data-dependant
Simon: splitting the jupyter installation for independent
5.3.5 to be released before 5.4.0
E-mail to announce date soon
5.4.0 upgrade tested on clone of nightshade. Went well.
Ice 3.6.4 - ci etc needs updating.
No more feature PRs. Bug-fixes only.
Focus now on docs, install steps etc.
Big Data in biology Jason, Simon, Eleanor
Seeing is believing
Training (December) - questions re: viz, cellprofiler
BDV data in place of OME-TIFF
Hackathon in December in Dresden
Hungary in Jan?
0.3.0 to be released this week.
Doesn’t require 5.4.0
Kenny: demo server under heavy load while testing iviewer.
JM: will monitor this…
No meeting this week.
Http -> https mostly complete
Jason: where to put feedback? Seb: “website backlog” trello
Demo and nightshade 5.4.0 upgrade testing went well
Registered CVE, but not heard back with number yet.
Working on backlog, microservices etc.
CellProfiler testing. New release soon. 3.0
(20-25 minutes plus 15 minutes questions max)
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
Josh: zeroc 3.7
OMERO 5.5.x support Ice 3.6 & 3.7.
Ice 3.7 is Java8+ only.
Simon: do we need to support 2 versions of Ice now?
Josh/Chris - removing 3.6 will mean no support for Java < 8.