Personal tools
  • We're Hiring!

You are here: Home About Licensing & Attribution Citing OME

Citing OME

We are delighted to have you cite the work of the Open Microscopy Environment from your own publications.

A full list of our publications and links to view and download them are at Publications.

OME-XML & OME-TIFF

The 2010 article outlining the importance of metadata and introducing the OME Compliant Specification:

Melissa Linkert, Curtis T. Rueden, Chris Allan, Jean-Marie Burel, Will Moore, Andrew Patterson, Brian Loranger, Josh Moore, Carlos Neves, Donald MacDonald, Aleksandra Tarkowska, Caitlin Sticco, Emma Hill, Mike Rossner, Kevin W. Eliceiri, and Jason R. Swedlow (2010) Metadata matters: access to image data in the real world. The Journal of Cell Biology, Vol. 189no. 5777-782 doi: 10.1083/jcb.201004104

PMID: 20513764

The original OME Data Model paper from 2005:

Goldberg, I., C. Allan, J.-M. Burel, D. Creager, A. Falconi, H. Hochheiser, J. Johnston, J. Mellen, P.K. Sorger, and J.R. Swedlow. (2005) The Open Microscopy Environment (OME) Data Model and XML File: Open Tools for Informatics and Quantitative Analysis in Biological Imaging. Genome Biol. 6:R47.

PMID: 15892875

Bio-Formats

Melissa Linkert, Curtis T. Rueden, Chris Allan, Jean-Marie Burel, Will Moore, Andrew Patterson, Brian Loranger, Josh Moore, Carlos Neves, Donald MacDonald, Aleksandra Tarkowska, Caitlin Sticco, Emma Hill, Mike Rossner, Kevin W. Eliceiri, and Jason R. Swedlow (2010) Metadata matters: access to image data in the real world. The Journal of Cell Biology, Vol. 189no. 5777-782 doi: 10.1083/jcb.201004104

PMID: 20513764

OMERO server and clients

Chris Allan, Jean-Marie Burel, Josh Moore, Colin Blackburn, Melissa Linkert, Scott Loynton, Donald MacDonald, William J Moore, Carlos Neves, Andrew Patterson, Michael Porter, Aleksandra Tarkowska, Brian Loranger, Jerome Avondo, Ingvar Lagerstedt, Luca Lianas, Simone Leo, Katherine Hands, Ron T Hay, Ardan Patwardhan, Christoph Best, Gerard J Kleywegt, Gianluigi Zanetti & Jason R Swedlow (2012) OMERO: flexible, model-driven data management for experimental biology. Nature Methods 9, 245–253. Published: 28 February 2012

PMID: 22373911

VisBio

You can cite the VisBio article in Traffic's June 2004 issue:

Rueden, C., K. W. Eliceiri and J. G. White, June 2004; VisBio: A Computational Tool for Visualization of Multidimensional Biological Image Data. Traffic 5(6), 411-417.

PMID: 15117315

The Original OME Server

Johnston, J., Nagaraja, A., Hochheiser, H., and Goldberg, I. G. (2006) A Flexible Framework for Web Interfaces to Image Databases: Supporting User-Defined Ontologies and Links to External Databases. 2006 IEEE International Symposium on Biomedical Imaging.

doi: 10.1109/ISBI.2006.1625184

Document Actions