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Annotations
Attributes
Diagrams
Facets
Identity Constraints
Instances
Model
Properties
Source
Used by
Main schema ome.xsd
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
Open Microscopy Environment
OME XML Schema June 2016
Properties
attribute form default unqualified
element form default qualified
version 2
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element OME
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The OME element is a container for all information objects accessible by OME.
        These information objects include descriptions of the imaging experiments
        and the people who perform them, descriptions of the microscope, the resulting
        images and how they were acquired, the analyses performed on those images,
        and the analysis results themselves.
        An OME file may contain any or all of this information.

        With the creation of the Metadata Only Companion OME-XML and Binary Only OME-TIFF files
        the top level OME node has changed slightly.
        It can EITHER:
        Contain all the previously expected elements
        OR:
        Contain a single BinaryOnly element that points at
        its Metadata Only Companion OME-XML file.
Diagram
Diagram ome_xsd.tmp#OME_UUID ome_xsd.tmp#OME_Creator ome_xsd.tmp#Rights ome_xsd.tmp#Project ome_xsd.tmp#Dataset ome_xsd.tmp#Folder ome_xsd.tmp#Experiment ome_xsd.tmp#Plate ome_xsd.tmp#Screen ome_xsd.tmp#Experimenter ome_xsd.tmp#ExperimenterGroup ome_xsd.tmp#Instrument ome_xsd.tmp#Image ome_xsd.tmp#StructuredAnnotations ome_xsd.tmp#ROI ome_xsd.tmp#OME_BinaryOnly
Properties
content complex
Model
Children BinaryOnly, Dataset, Experiment, Experimenter, ExperimenterGroup, Folder, Image, Instrument, Plate, Project, ROI, Rights, Screen, StructuredAnnotations
Instance
 
<OME Creator="" UUID="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Rights>{0,1}</Rights>
  <Project ID="" Name="">{0,unbounded}</Project>
  <Dataset ID="" Name="">{0,unbounded}</Dataset>
  <Folder ID="" Name="">{0,unbounded}</Folder>
  <Experiment ID="" Type="">{0,unbounded}</Experiment>
  <Plate ColumnNamingConvention="" Columns="" ExternalIdentifier="" FieldIndex="" ID="" Name="" RowNamingConvention="" Rows="" Status="" WellOriginX="" WellOriginXUnit="reference frame" WellOriginY="" WellOriginYUnit="reference frame">{0,unbounded}</Plate>
  <Screen ID="" Name="" ProtocolDescription="" ProtocolIdentifier="" ReagentSetDescription="" ReagentSetIdentifier="" Type="">{0,unbounded}</Screen>
  <Experimenter Email="" FirstName="" ID="" Institution="" LastName="" MiddleName="" UserName="">{0,unbounded}</Experimenter>
  <ExperimenterGroup ID="" Name="">{0,unbounded}</ExperimenterGroup>
  <Instrument ID="">{0,unbounded}</Instrument>
  <Image ID="" Name="">{0,unbounded}</Image>
  <StructuredAnnotations>{0,1}</StructuredAnnotations>
  <ROI ID="" Name="">{0,unbounded}</ROI>
  <BinaryOnly MetadataFile="" UUID="">{1,1}</BinaryOnly>
</OME>
Attributes
QName Type Use Annotation
Creator xsd:string optional 
This is the name of the creating application of the OME-XML
and preferably its full version.
e.g "CompanyName, SoftwareName, V2.6.3456"
This is optional but we hope it will be set by applications
writing out OME-XML from scratch.
UUID UniversallyUniqueIdentifier optional 
This unique identifier is used to keep track of multi part files.
            It allows the links between files to survive renaming.

            While OPTIONAL in the general case this is REQUIRED in a
            MetadataOnly Companion to a collection of BinaryOnly files.
Source
 
<xsd:element name="OME">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The OME element is a container for all information objects accessible by OME. These information objects include descriptions of the imaging experiments and the people who perform them, descriptions of the microscope, the resulting images and how they were acquired, the analyses performed on those images, and the analysis results themselves. An OME file may contain any or all of this information. With the creation of the Metadata Only Companion OME-XML and Binary Only OME-TIFF files the top level OME node has changed slightly. It can EITHER: Contain all the previously expected elements OR: Contain a single BinaryOnly element that points at its Metadata Only Companion OME-XML file.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="Rights" minOccurs="0" maxOccurs="1"/>
      <xsd:choice>
        <!-- Either: standard expected elements -->
        <xsd:sequence>
          <xsd:element ref="Project" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Dataset" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Folder" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Experiment" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Plate" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Screen" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Experimenter" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="ExperimenterGroup" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Instrument" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="Image" minOccurs="0" maxOccurs="unbounded"/>
          <xsd:element ref="StructuredAnnotations" minOccurs="0" maxOccurs="1"/>
          <xsd:element ref="ROI" minOccurs="0" maxOccurs="unbounded"/>
        </xsd:sequence>
        <!-- Or: Single BinaryOnly element -->
        <xsd:element name="BinaryOnly" minOccurs="1" maxOccurs="1">
          <xsd:annotation>
            <xsd:documentation>Pointer to an external metadata file. If this element is present, then no other metadata may be present in this file, i.e. this file is a place-holder.</xsd:documentation>
          </xsd:annotation>
          <xsd:complexType>
            <xsd:attribute name="MetadataFile" type="xsd:string" use="required">
              <xsd:annotation>
                <xsd:documentation>Filename of the OME-XML metadata file for this binary data. If the file cannot be found, a search can be performed based on the UUID.</xsd:documentation>
              </xsd:annotation>
            </xsd:attribute>
            <xsd:attribute name="UUID" type="UniversallyUniqueIdentifier" use="required">
              <xsd:annotation>
                <xsd:documentation>The unique identifier of another OME-XML block whose metadata describes the binary data in this file. This UUID is considered authoritative regardless of mismatches in the filename.</xsd:documentation>
              </xsd:annotation>
            </xsd:attribute>
          </xsd:complexType>
        </xsd:element>
        <!-- End of MetadataOnly Element -->
      </xsd:choice>
    </xsd:sequence>
    <xsd:attribute name="UUID" type="UniversallyUniqueIdentifier" use="optional">
      <xsd:annotation>
        <xsd:documentation>This unique identifier is used to keep track of multi part files. It allows the links between files to survive renaming. While OPTIONAL in the general case this is REQUIRED in a MetadataOnly Companion to a collection of BinaryOnly files.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Creator" type="xsd:string" use="optional">
      <xsd:annotation>
        <xsd:documentation>This is the name of the creating application of the OME-XML and preferably its full version. e.g "CompanyName, SoftwareName, V2.6.3456" This is optional but we hope it will be set by applications writing out OME-XML from scratch.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
  <!-- Unique IDs -->
  <xsd:key name="ChannelIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="DatasetIDKey">
    <xsd:selector xpath="OME:Dataset"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="DetectorIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Detector"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="DichroicIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Dichroic"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ExperimentIDKey">
    <xsd:selector xpath="OME:Experiment"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ExperimenterIDKey">
    <xsd:selector xpath="OME:Experimenter"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="FilterIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Filter"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="FilterSetIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="FolderIDKey">
    <xsd:selector xpath="OME:Folder"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:ExperimenterGroup"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ImageIDKey">
    <xsd:selector xpath="OME:Image"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="InstrumentIDKey">
    <xsd:selector xpath="OME:Instrument"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="LightSourceIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Laser|OME:Instrument/OME:Arc|OME:Instrument/OME:Filament|OME:Instrument/OME:LightEmittingDiode|OME:Instrument/OME:GenericExcitationSource"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="MicrobeamManipulationIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ObjectiveIDKey">
    <xsd:selector xpath="OME:Instrument/OME:Objective"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="PixelsIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="PlateIDKey">
    <xsd:selector xpath="OME:Plate"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ProjectIDKey">
    <xsd:selector xpath="OME:Project"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ReagentIDKey">
    <xsd:selector xpath="OME:Screen/OME:Reagent"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ScreenAcquisitionIDKey">
    <xsd:selector xpath="OME:Screen/OME:ScreenAcquisition"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ScreenIDKey">
    <xsd:selector xpath="OME:Screen"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="WellIDKey">
    <xsd:selector xpath="OME:Plate/OME:Well"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="WellSampleIDKey">
    <xsd:selector xpath="OME:Plate/OME:Well/OME:WellSample"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ROIIDKey">
    <xsd:selector xpath="OME:ROI"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="ShapeIDKey">
    <xsd:selector xpath="OME:ROI/OME:Union/OME:Rectangle|OME:ROI/OME:Union/OME:Mask|OME:ROI/OME:Union/OME:Ellipse|OME:ROI/OME:Union/OME:Point|OME:ROI/OME:Union/OME:Line|OME:ROI/OME:Union/OME:Polyline|OME:ROI/OME:Union/OME:Polygon|OME:ROI/OME:Union/OME:Label"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <xsd:key name="AnnotationIDKey">
    <xsd:selector xpath="OME:StructuredAnnotations/*"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <!-- Unique references -->
  <xsd:key name="WellSampleImageRefIDKey">
    <xsd:selector xpath="OME:Plate/OME:Well/OME:WellSample/OME:ImageRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:key>
  <!-- Valid references -->
  <xsd:keyref name="DatasetExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Dataset/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="DatasetExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Dataset/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="DatasetProjectIDKeyRef" refer="OME:ProjectIDKey">
    <xsd:selector xpath="OME:Dataset/OME:ProjectRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Experiment/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentMicrobeamManipulationExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentMicrobeamManipulationLightSourceSettingsLightSourceIDKeyRef" refer="OME:LightSourceIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation/OME:LightSourceSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimenterExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Experimenter/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimenterGroupContactExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:ExperimenterGroup/OME:Contact"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimenterGroupLeaderExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:ExperimenterGroup/OME:Leader"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="FolderFolderIDKeyRef" refer="OME:FolderIDKey">
    <xsd:selector xpath="OME:Folder/OME:FolderRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="FolderImageIDKeyRef" refer="OME:ImageIDKey">
    <xsd:selector xpath="OME:Folder/OME:ImageRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="FolderROIIDKeyRef" refer="OME:ROIIDKey">
    <xsd:selector xpath="OME:Folder/OME:ROIRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageDatasetIDKeyRef" refer="OME:DatasetIDKey">
    <xsd:selector xpath="OME:Image/OME:DatasetRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Image/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageExperimentIDKeyRef" refer="OME:ExperimentIDKey">
    <xsd:selector xpath="OME:Image/OME:ExperimentRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Image/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageInstrumentIDKeyRef" refer="OME:InstrumentIDKey">
    <xsd:selector xpath="OME:Image/OME:InstrumentRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageMicrobeamManipulationIDKeyRef" refer="OME:MicrobeamManipulationIDKey">
    <xsd:selector xpath="OME:Image/OME:MicrobeamManipulationRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageObjectiveSettingsObjectiveIDKeyRef" refer="OME:ObjectiveIDKey">
    <xsd:selector xpath="OME:Image/OME:ObjectiveSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelDetectorSettingsDetectorIDKeyRef" refer="OME:DetectorIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:DetectorSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelFilterSetIDKeyRef" refer="OME:FilterSetIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:FilterSetRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathExcitationFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:ExcitationFilterPath/OME:FilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathExcitationDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:ExcitationFilterPath/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathEmissionFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:EmissionFilterPath/OME:FilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightPathEmissionDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightPath/OME:EmissionFilterPath/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImagePixelsChannelLightSourceSettingsLightSourceIDKeyRef" refer="OME:LightSourceIDKey">
    <xsd:selector xpath="OME:Image/OME:Pixels/OME:Channel/OME:LightSourceSettings"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentFilterSetExcitationFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet/OME:ExcitationFilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentFilterSetDichroicIDKeyRef" refer="OME:DichroicIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet/OME:DichroicRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentFilterSetEmissionFilterIDKeyRef" refer="OME:FilterIDKey">
    <xsd:selector xpath="OME:Instrument/OME:FilterSet/OME:EmissionFilterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="InstrumentLightSourceLaserPumpLightSourceIDKey" refer="OME:LightSourceIDKey">
    <xsd:selector xpath="OME:Instrument/OME:LightSource/OME:Laser/OME:Pump"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="PlateScreenIDKeyRef" refer="OME:ScreenIDKey">
    <xsd:selector xpath="OME:Plate/OME:ScreenRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="PlateWellReagentIDKeyRef" refer="OME:ReagentIDKey">
    <xsd:selector xpath="OME:Plate/OME:Well/OME:ReagentRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="PlateWellWellSampleImageIDKeyRef" refer="OME:ImageIDKey">
    <xsd:selector xpath="OME:Plate/OME:Well/OME:WellSample/OME:ImageRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ProjectExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:Project/OME:ExperimenterRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ProjectExperimenterGroupIDKeyRef" refer="OME:ExperimenterGroupIDKey">
    <xsd:selector xpath="OME:Project/OME:ExperimenterGroupRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ScreenPlateIDKeyRef" refer="OME:PlateIDKey">
    <xsd:selector xpath="OME:Screen/OME:PlateRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ScreenScreenAcquisitionWellSampleIDKeyRef" refer="OME:WellSampleIDKey">
    <xsd:selector xpath="OME:Screen/OME:ScreenAcquisition/OME:WellSampleRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ExperimentMicrobeamManipulationROIIDKeyRef" refer="OME:ROIIDKey">
    <xsd:selector xpath="OME:Experiment/OME:MicrobeamManipulation/ROIRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="ImageROIIDKeyRef" refer="OME:ROIIDKey">
    <xsd:selector xpath="OME:Image/ROIRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="AnnotationRefAnnotationIDKeyRef" refer="OME:AnnotationIDKey">
    <xsd:selector xpath=".//OME:AnnotationRef"/>
    <xsd:field xpath="@ID"/>
  </xsd:keyref>
  <xsd:keyref name="AnnotationAnnotatorExperimenterIDKeyRef" refer="OME:ExperimenterIDKey">
    <xsd:selector xpath="OME:StructuredAnnotations/*"/>
    <xsd:field xpath="@Annotator"/>
  </xsd:keyref>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Rights
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The rights holder of this data and the rights held.
Diagram
Diagram ome_xsd.tmp#Rights_RightsHolder ome_xsd.tmp#Rights_RightsHeld
Properties
content complex
Used by
Element OME
Model
Children RightsHeld, RightsHolder
Instance
 
<Rights xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <RightsHolder>{0,1}</RightsHolder>
  <RightsHeld>{0,1}</RightsHeld>
</Rights>
Source
 
<xsd:element name="Rights">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Rights</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The rights holder of this data and the rights held.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="RightsHolder" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>The rights holder for this data. [plain-text multi-line string] e.g. "Copyright (C) 2002 - 2016 Open Microscopy Environment"</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element name="RightsHeld" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>The rights held by the rights holder. [plain-text multi-line string] e.g. "All rights reserved" or "Creative Commons Attribution 3.0 Unported License"</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
    </xsd:sequence>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Rights / RightsHolder
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The rights holder for this data. [plain-text multi-line string]
e.g. "Copyright (C) 2002 - 2016 Open Microscopy Environment"
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="RightsHolder" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>The rights holder for this data. [plain-text multi-line string] e.g. "Copyright (C) 2002 - 2016 Open Microscopy Environment"</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Rights / RightsHeld
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The rights held by the rights holder. [plain-text multi-line string]
e.g. "All rights reserved" or "Creative Commons Attribution 3.0 Unported License"
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="RightsHeld" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>The rights held by the rights holder. [plain-text multi-line string] e.g. "All rights reserved" or "Creative Commons Attribution 3.0 Unported License"</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Project
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The Project ID is required.
Datasets can be grouped into projects using a many-to-many relationship.
A Dataset may belong to one or more Projects by including one or more ProjectRef elements which refer to Project IDs.
Projects do not directly contain images - only by virtue of containing datasets, which themselves contain images.
Diagram
Diagram ome_xsd.tmp#Project_Name ome_xsd.tmp#Project_ID ome_xsd.tmp#Project_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#ExperimenterGroupRef ome_xsd.tmp#DatasetRef ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, DatasetRef, Description, ExperimenterGroupRef, ExperimenterRef
Instance
 
<Project ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,1}</ExperimenterRef>
  <ExperimenterGroupRef ID="">{0,1}</ExperimenterGroupRef>
  <DatasetRef ID="">{0,unbounded}</DatasetRef>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Project>
Attributes
QName Type Use
ID ProjectID required
Name xsd:string optional
Source
 
<xsd:element name="Project">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Projects</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Project ID is required. Datasets can be grouped into projects using a many-to-many relationship. A Dataset may belong to one or more Projects by including one or more ProjectRef elements which refer to Project IDs. Projects do not directly contain images - only by virtue of containing datasets, which themselves contain images.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the project. [plain-text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ExperimenterGroupRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="DatasetRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="Name" use="optional" type="xsd:string"/>
    <xsd:attribute name="ID" use="required" type="ProjectID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Project / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the project. [plain-text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the project. [plain-text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element ExperimenterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
This empty element has a required Experimenter ID and an optional DocumentID attribute which refers to one of the Experimenters defined within OME.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ExperimenterRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID ExperimenterID required
Source
 
<xsd:element name="ExperimenterRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>This empty element has a required Experimenter ID and an optional DocumentID attribute which refers to one of the Experimenters defined within OME.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ExperimenterID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element ExperimenterGroupRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
This empty element has a reference (the ExperimenterGroup ID attribute) to a ExperimenterGroup defined within OME.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ExperimenterGroupRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Elements Dataset, Image, Project
Attributes
QName Type Use
ID ExperimenterGroupID required
Source
 
<xsd:element name="ExperimenterGroupRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>This empty element has a reference (the ExperimenterGroup ID attribute) to a ExperimenterGroup defined within OME.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ExperimenterGroupID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element DatasetRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The DatasetRef element refers to a Dataset by specifying the Dataset ID attribute.
One or more DatasetRef elements may be listed within the Image element to specify what Datasets
the Image belongs to.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#DatasetRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Project
Attributes
QName Type Use
ID DatasetID required
Source
 
<xsd:element name="DatasetRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The DatasetRef element refers to a Dataset by specifying the Dataset ID attribute. One or more DatasetRef elements may be listed within the Image element to specify what Datasets the Image belongs to.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="DatasetID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element AnnotationRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The AnnotationRef element is a reference to an element derived
from the CommonAnnotation element.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#AnnotationRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID AnnotationID required
Source
 
<xsd:element name="AnnotationRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The AnnotationRef element is a reference to an element derived from the CommonAnnotation element.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="AnnotationID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Dataset
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
An element specifying a collection of images that are always processed together.
Images can belong to more than one Dataset, and a Dataset may contain more than one Image.
Images contain one or more DatasetRef elements to specify what datasets they belong to.
Once a Dataset has been processed in any way, its collection of images cannot be altered.
The ExperimenterRef and ExperimenterGroupRef elements specify the person and group this Dataset belongs to.
Projects may contain one or more Datasets, and Datasets may belong to one or more Projects.
This relationship is specified by listing DatasetRef elements within the Project element.
Diagram
Diagram ome_xsd.tmp#Dataset_Name ome_xsd.tmp#Dataset_ID ome_xsd.tmp#Dataset_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#ExperimenterGroupRef ome_xsd.tmp#ImageRef ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Description, ExperimenterGroupRef, ExperimenterRef, ImageRef
Instance
 
<Dataset ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,1}</ExperimenterRef>
  <ExperimenterGroupRef ID="">{0,1}</ExperimenterGroupRef>
  <ImageRef ID="">{0,unbounded}</ImageRef>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Dataset>
Attributes
QName Type Use Annotation
ID DatasetID required
Name xsd:string optional 
A name for the dataset that is suitable for presentation to the user.
Source
 
<xsd:element name="Dataset">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Datasets</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>An element specifying a collection of images that are always processed together. Images can belong to more than one Dataset, and a Dataset may contain more than one Image. Images contain one or more DatasetRef elements to specify what datasets they belong to. Once a Dataset has been processed in any way, its collection of images cannot be altered. The ExperimenterRef and ExperimenterGroupRef elements specify the person and group this Dataset belongs to. Projects may contain one or more Datasets, and Datasets may belong to one or more Projects. This relationship is specified by listing DatasetRef elements within the Project element.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the dataset. [plain-text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ExperimenterGroupRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="ImageRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A name for the dataset that is suitable for presentation to the user.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ID" use="required" type="DatasetID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Dataset / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the dataset. [plain-text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the dataset. [plain-text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element ImageRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The ImageRef element is a reference to an Image element.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ImageRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID ImageID required
Source
 
<xsd:element name="ImageRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The ImageRef element is a reference to an Image element.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ImageID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Folder
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
An element specifying a possibly heterogeneous collection of data.
Folders may contain Folders so that data may be organized within a tree of Folders.
Data may be in multiple Folders but a Folder may not be in more than one other Folder.
Diagram
Diagram ome_xsd.tmp#Folder_ID ome_xsd.tmp#Folder_Name ome_xsd.tmp#Folder_Description ome_xsd.tmp#FolderRef ome_xsd.tmp#ImageRef ome_xsd.tmp#ROIRef ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Description, FolderRef, ImageRef, ROIRef
Instance
 
<Folder ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <FolderRef ID="">{0,unbounded}</FolderRef>
  <ImageRef ID="">{0,unbounded}</ImageRef>
  <ROIRef ID="">{0,unbounded}</ROIRef>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Folder>
Attributes
QName Type Use Annotation
ID FolderID required
Name xsd:string optional 
A name for the folder that is suitable for presentation to the user.
Source
 
<xsd:element name="Folder">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Folders</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>An element specifying a possibly heterogeneous collection of data. Folders may contain Folders so that data may be organized within a tree of Folders. Data may be in multiple Folders but a Folder may not be in more than one other Folder.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the folder. [plain-text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="FolderRef" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="ImageRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="ROIRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="FolderID"/>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A name for the folder that is suitable for presentation to the user.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Folder / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the folder. [plain-text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the folder. [plain-text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element FolderRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The FolderRef element refers to a Folder by specifying the Folder ID attribute.
One or more FolderRef elements may be listed within the Folder element to specify what Folders
the Folder contains. This tree hierarchy must be acyclic.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FolderRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Folder
Attributes
QName Type Use
ID FolderID required
Source
 
<xsd:element name="FolderRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The FolderRef element refers to a Folder by specifying the Folder ID attribute. One or more FolderRef elements may be listed within the Folder element to specify what Folders the Folder contains. This tree hierarchy must be acyclic.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="FolderID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element ROIRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ROIRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID ROIID required
Source
 
<xsd:element name="ROIRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ROIID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Experiment
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
This element describes the type of experiment.  The required Type attribute must contain one or more entries from the following list:
FP FRET Time-lapse 4-D+ Screen Immunocytochemistry FISH Electrophysiology  Ion-Imaging Colocalization PGI/Documentation
FRAP Photoablation Optical-Trapping Photoactivation Fluorescence-Lifetime Spectral-Imaging Other
FP refers to fluorescent proteins, PGI/Documentation is not a 'data' image.
The optional Description element may contain free text to further describe the experiment.
Diagram
Diagram ome_xsd.tmp#Experiment_Type ome_xsd.tmp#Experiment_ID ome_xsd.tmp#Experiment_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#MicrobeamManipulation
Properties
content complex
Used by
Element OME
Model
Children Description, ExperimenterRef, MicrobeamManipulation
Instance
 
<Experiment ID="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,1}</ExperimenterRef>
  <MicrobeamManipulation ID="" Type="">{0,unbounded}</MicrobeamManipulation>
</Experiment>
Attributes
QName Type Use Annotation
ID ExperimentID required
Type list of restriction of xsd:string optional 
A term to describe the type of experiment.
Source
 
<xsd:element name="Experiment">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Experiments</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element describes the type of experiment. The required Type attribute must contain one or more entries from the following list: FP FRET Time-lapse 4-D+ Screen Immunocytochemistry FISH Electrophysiology Ion-Imaging Colocalization PGI/Documentation FRAP Photoablation Optical-Trapping Photoactivation Fluorescence-Lifetime Spectral-Imaging Other FP refers to fluorescent proteins, PGI/Documentation is not a 'data' image. The optional Description element may contain free text to further describe the experiment.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the experiment. [plain-text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>This is a link to the Experimenter who conducted the experiment</xsd:documentation>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="MicrobeamManipulation" minOccurs="0" maxOccurs="unbounded"/>
    </xsd:sequence>
    <xsd:attribute name="Type" use="optional">
      <xsd:annotation>
        <xsd:documentation>A term to describe the type of experiment.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:list>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="FP"/>
              <xsd:enumeration value="FRET"/>
              <!-- Förster resonance energy transfer, also known as fluorescence resonance energy transfer, resonance energy transfer (RET) or electronic energy transfer (EET) -->
              <xsd:enumeration value="TimeLapse"/>
              <!--  Time-lapse microscopy (microphotography, photomicrography) -->
              <xsd:enumeration value="FourDPlus"/>
              <xsd:enumeration value="Screen"/>
              <xsd:enumeration value="Immunocytochemistry"/>
              <xsd:enumeration value="Immunofluorescence"/>
              <xsd:enumeration value="FISH"/>
              <!-- Fluorescent in situ hybridization -->
              <xsd:enumeration value="Electrophysiology"/>
              <xsd:enumeration value="IonImaging"/>
              <xsd:enumeration value="Colocalization"/>
              <xsd:enumeration value="PGIDocumentation"/>
              <xsd:enumeration value="FluorescenceLifetime"/>
              <!-- Fluorescence lifetime imaging (FLIM) -->
              <xsd:enumeration value="SpectralImaging"/>
              <xsd:enumeration value="Photobleaching"/>
              <xsd:enumeration value="SPIM"/>
              <!-- Selective or Single Plane Illumination Microscopy -->
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:list>
      </xsd:simpleType>
    </xsd:attribute>
    <xsd:attribute name="ID" use="required" type="ExperimentID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Experiment / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the experiment. [plain-text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the experiment. [plain-text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element MicrobeamManipulation
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
Defines a microbeam operation type and the region of the image it was applied to.
The LightSourceRef element is a reference to a LightSource specified in the Instrument element which was used for a technique other than illumination for
the purpose of imaging. For example, a laser used for photobleaching.
Diagram
Diagram ome_xsd.tmp#MicrobeamManipulation_ID ome_xsd.tmp#MicrobeamManipulation_Type ome_xsd.tmp#MicrobeamManipulation_Description ome_xsd.tmp#ROIRef ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#LightSourceSettings
Properties
content complex
Used by
Element Experiment
Model
Children Description, ExperimenterRef, LightSourceSettings, ROIRef
Instance
 
<MicrobeamManipulation ID="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <ROIRef ID="">{1,unbounded}</ROIRef>
  <ExperimenterRef ID="">{1,1}</ExperimenterRef>
  <LightSourceSettings Attenuation="" ID="" Wavelength="" WavelengthUnit="nm">{0,unbounded}</LightSourceSettings>
</MicrobeamManipulation>
Attributes
QName Type Use Annotation
ID MicrobeamManipulationID required
Type list of restriction of xsd:string optional 
The type of manipulation performed.
Source
 
<xsd:element name="MicrobeamManipulation">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>MicrobeamManipulations</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Defines a microbeam operation type and the region of the image it was applied to. The LightSourceRef element is a reference to a LightSource specified in the Instrument element which was used for a technique other than illumination for the purpose of imaging. For example, a laser used for photobleaching.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the Microbeam Manipulation. [plain-text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ROIRef" minOccurs="1" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="1" maxOccurs="1"/>
      <xsd:element ref="LightSourceSettings" minOccurs="0" maxOccurs="unbounded"/>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="MicrobeamManipulationID"/>
    <xsd:attribute name="Type" use="optional">
      <xsd:annotation>
        <xsd:documentation>The type of manipulation performed.</xsd:documentation>
      </xsd:annotation>
      <xsd:simpleType>
        <xsd:list>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="FRAP"/>
              <!-- Fluorescence recovery after photobleaching -->
              <xsd:enumeration value="FLIP"/>
              <!-- Fluorescence Loss in Photobleaching -->
              <xsd:enumeration value="InverseFRAP"/>
              <!-- iFRAP, inverse FRAP -->
              <xsd:enumeration value="Photoablation"/>
              <xsd:enumeration value="Photoactivation"/>
              <xsd:enumeration value="Uncaging"/>
              <xsd:enumeration value="OpticalTrapping"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:list>
      </xsd:simpleType>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element MicrobeamManipulation / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the Microbeam Manipulation. [plain-text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the Microbeam Manipulation. [plain-text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element LightSourceSettings
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Settings ome_xsd.tmp#LightSourceSettings_ID ome_xsd.tmp#LightSourceSettings_Attenuation ome_xsd.tmp#LightSourceSettings_Wavelength ome_xsd.tmp#LightSourceSettings_WavelengthUnit
Type extension of Settings
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Default Use Annotation
Attenuation PercentFraction optional 
The Attenuation of the light source [units:none]
A fraction, as a value from 0.0 to 1.0.
ID LightSourceID required
Wavelength PositiveFloat optional 
The Wavelength of the light source. Units are set by WavelengthUnit.
WavelengthUnit UnitsLength nm optional 
The units of the Wavelength of the light source - default:nanometres[nm]
Source
 
<xsd:element name="LightSourceSettings">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>LightSourceSettingsCombinations</plural>
      </xsdfu>
    </xsd:appinfo>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Settings">
        <xsd:attribute name="ID" use="required" type="LightSourceID"/>
        <xsd:attribute name="Attenuation" use="optional" type="PercentFraction">
          <xsd:annotation>
            <xsd:documentation>The Attenuation of the light source [units:none] A fraction, as a value from 0.0 to 1.0.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Wavelength" use="optional" type="PositiveFloat">
          <xsd:annotation>
            <xsd:documentation>The Wavelength of the light source. Units are set by WavelengthUnit.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="WavelengthUnit" use="optional" default="nm" type="UnitsLength">
          <xsd:annotation>
            <xsd:documentation>The units of the Wavelength of the light source - default:nanometres[nm]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Plate
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
This element identifies microtiter plates within a screen.
A plate can belong to more than one screen.
The Screen(s) that a plate belongs to are specified by the ScreenRef element.
The Plate ID and Name attributes are required.
The Wells in a plate are numbers from the top-left corner in a grid starting at zero.
i.e. The top-left well of a plate is index (0,0)
Diagram
Diagram ome_xsd.tmp#Plate_ID ome_xsd.tmp#Plate_Name ome_xsd.tmp#Plate_Status ome_xsd.tmp#Plate_ExternalIdentifier ome_xsd.tmp#Plate_ColumnNamingConvention ome_xsd.tmp#Plate_RowNamingConvention ome_xsd.tmp#Plate_WellOriginX ome_xsd.tmp#Plate_WellOriginXUnit ome_xsd.tmp#Plate_WellOriginY ome_xsd.tmp#Plate_WellOriginYUnit ome_xsd.tmp#Plate_Rows ome_xsd.tmp#Plate_Columns ome_xsd.tmp#Plate_FieldIndex ome_xsd.tmp#Plate_Description ome_xsd.tmp#Well ome_xsd.tmp#AnnotationRef ome_xsd.tmp#PlateAcquisition
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Description, PlateAcquisition, Well
Instance
 
<Plate ColumnNamingConvention="" Columns="" ExternalIdentifier="" FieldIndex="" ID="" Name="" RowNamingConvention="" Rows="" Status="" WellOriginX="" WellOriginXUnit="reference frame" WellOriginY="" WellOriginYUnit="reference frame" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <Well Color="-1" Column="" ExternalDescription="" ExternalIdentifier="" ID="" Row="" Type="">{0,unbounded}</Well>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
  <PlateAcquisition EndTime="" ID="" MaximumFieldCount="" Name="" StartTime="">{0,unbounded}</PlateAcquisition>
</Plate>
Attributes
QName Type Default Use Annotation
ColumnNamingConvention NamingConvention optional 
The ColumnNamingConvention
Columns PositiveInt optional 
The number of columns in the plate
ExternalIdentifier xsd:string optional 
The ExternalIdentifier attribute may contain a reference to an external database.
FieldIndex NonNegativeInt optional 
The index of the WellSample to display as the default Field
ID PlateID required
Name xsd:string optional 
The Name identifies the plate to the user.
            It is used much like the ID, and so must be
            unique within the document.

            If a plate name is not available when one is needed
            it will be constructed in the following order:
            1. If name is available use it.
            2. If not use "Start time - End time"
            (NOTE: Not a subtraction! A string representation
            of the two times separated by a dash.)
            3. If these times are not available use the Plate ID.
RowNamingConvention NamingConvention optional 
The RowNamingConvention
Rows PositiveInt optional 
The number of rows in the plate
Status xsd:string optional 
A textual annotation of the current state of the plate with respect to the
experiment work-flow; e.g.
1. Seed cell: done; 2. Transfection: done;      3. Gel doc: todo.
WellOriginX xsd:float optional 
This defines the X position to use for the origin of the
            fields (individual images) taken in a well. It is used
            with the X in the WellSample to display the fields
            in the correct position relative to each other. Each Well
            in the plate has the same well origin. Units are set by WellOriginXUnit.

            In the OMERO clients by convention we display the WellOrigin
            in the center of the view.
WellOriginXUnit UnitsLength reference frame optional 
The units of the well origin in X - default:reference frame.
WellOriginY xsd:float optional 
This defines the Y position to use for the origin of the
            fields (individual images) taken in a well. It is used
            with the Y in the WellSample to display the fields
            in the correct position relative to each other. Each Well
            in the plate has the same well origin.  Units are set by WellOriginYUnit.

            In the OMERO clients by convention we display the WellOrigin
            in the center of the view.
WellOriginYUnit UnitsLength reference frame optional 
The units of the well origin in Y - default:reference frame.
Source
 
<xsd:element name="Plate">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Plates</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element identifies microtiter plates within a screen. A plate can belong to more than one screen. The Screen(s) that a plate belongs to are specified by the ScreenRef element. The Plate ID and Name attributes are required. The Wells in a plate are numbers from the top-left corner in a grid starting at zero. i.e. The top-left well of a plate is index (0,0)</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the plate.</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="Well" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="PlateAcquisition" minOccurs="0" maxOccurs="unbounded"/>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="PlateID"/>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>The Name identifies the plate to the user. It is used much like the ID, and so must be unique within the document. If a plate name is not available when one is needed it will be constructed in the following order: 1. If name is available use it. 2. If not use "Start time - End time" (NOTE: Not a subtraction! A string representation of the two times separated by a dash.) 3. If these times are not available use the Plate ID.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Status" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A textual annotation of the current state of the plate with respect to the experiment work-flow; e.g. 1. Seed cell: done; 2. Transfection: done; 3. Gel doc: todo.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ExternalIdentifier" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>The ExternalIdentifier attribute may contain a reference to an external database.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ColumnNamingConvention" use="optional" type="NamingConvention">
      <xsd:annotation>
        <xsd:documentation>The ColumnNamingConvention</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="RowNamingConvention" use="optional" type="NamingConvention">
      <xsd:annotation>
        <xsd:documentation>The RowNamingConvention</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="WellOriginX" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>This defines the X position to use for the origin of the fields (individual images) taken in a well. It is used with the X in the WellSample to display the fields in the correct position relative to each other. Each Well in the plate has the same well origin. Units are set by WellOriginXUnit. In the OMERO clients by convention we display the WellOrigin in the center of the view.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="WellOriginXUnit" use="optional" default="reference frame" type="UnitsLength">
      <xsd:annotation>
        <xsd:documentation>The units of the well origin in X - default:reference frame.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="WellOriginY" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>This defines the Y position to use for the origin of the fields (individual images) taken in a well. It is used with the Y in the WellSample to display the fields in the correct position relative to each other. Each Well in the plate has the same well origin. Units are set by WellOriginYUnit. In the OMERO clients by convention we display the WellOrigin in the center of the view.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="WellOriginYUnit" use="optional" default="reference frame" type="UnitsLength">
      <xsd:annotation>
        <xsd:documentation>The units of the well origin in Y - default:reference frame.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Rows" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>The number of rows in the plate</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Columns" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>The number of columns in the plate</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="FieldIndex" use="optional" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>The index of the WellSample to display as the default Field</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
  <!-- Unique Indexes -->
  <xsd:key name="WellSampleIndex">
    <xsd:selector xpath="Well/WellSample"/>
    <xsd:field xpath="@Index"/>
  </xsd:key>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Plate / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the plate.
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the plate.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Well
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A Well is a component of the Well/Plate/Screen construct to describe screening applications.
A Well has a number of WellSample elements that link to the Images collected in this well.
The ReagentRef links any Reagents that were used in this Well. A well is part of only one Plate.
The origin for the row and column identifiers is the top left corner of the plate starting at zero.
i.e The top left well of a plate is index (0,0)
Diagram
Diagram ome_xsd.tmp#Well_ID ome_xsd.tmp#Well_Column ome_xsd.tmp#Well_Row ome_xsd.tmp#Well_ExternalDescription ome_xsd.tmp#Well_ExternalIdentifier ome_xsd.tmp#Well_Type ome_xsd.tmp#Well_Color ome_xsd.tmp#WellSample ome_xsd.tmp#ReagentRef ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element Plate
Model
Children AnnotationRef, ReagentRef, WellSample
Instance
 
<Well Color="-1" Column="" ExternalDescription="" ExternalIdentifier="" ID="" Row="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <WellSample ID="" Index="" PositionX="" PositionXUnit="reference frame" PositionY="" PositionYUnit="reference frame" Timepoint="">{0,unbounded}</WellSample>
  <ReagentRef ID="">{0,1}</ReagentRef>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Well>
Attributes
QName Type Default Use Annotation
Color Color -1 optional 
A marker color used to highlight the well - encoded as RGBA
The default value "-1" is #FFFFFFFF so solid white (it is a signed 32 bit value)
NOTE: Prior to the 2012-06 schema the default value was incorrect and produced a transparent red not solid white.
Column NonNegativeInt required 
This is the column index of the well, the origin is the top left corner of the plate
with the first column of cells being column zero. i.e top left is (0,0)
The combination of Row, Column has to be unique for each well in a plate.
ExternalDescription xsd:string optional 
A description of the externally defined identifier for this plate.
ExternalIdentifier xsd:string optional 
The ExternalIdentifier attribute may contain a reference to an external database.
ID WellID required
Row NonNegativeInt required 
This is the row index of the well, the origin is the top left corner of the plate
with the first row of wells being row zero. i.e top left is (0,0)
The combination of Row, Column has to be unique for each well in a plate.
Type xsd:string optional 
A human readable identifier for the screening status.
e.g. empty, positive control, negative control, control, experimental, etc.
Source
 
<xsd:element name="Well">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Wells</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>A Well is a component of the Well/Plate/Screen construct to describe screening applications. A Well has a number of WellSample elements that link to the Images collected in this well. The ReagentRef links any Reagents that were used in this Well. A well is part of only one Plate. The origin for the row and column identifiers is the top left corner of the plate starting at zero. i.e The top left well of a plate is index (0,0)</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="WellSample" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <ordered/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="ReagentRef" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="WellID"/>
    <xsd:attribute name="Column" use="required" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>This is the column index of the well, the origin is the top left corner of the plate with the first column of cells being column zero. i.e top left is (0,0) The combination of Row, Column has to be unique for each well in a plate.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Row" use="required" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>This is the row index of the well, the origin is the top left corner of the plate with the first row of wells being row zero. i.e top left is (0,0) The combination of Row, Column has to be unique for each well in a plate.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ExternalDescription" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A description of the externally defined identifier for this plate.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ExternalIdentifier" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>The ExternalIdentifier attribute may contain a reference to an external database.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Type" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A human readable identifier for the screening status. e.g. empty, positive control, negative control, control, experimental, etc.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Color" use="optional" type="Color" default="-1">
      <xsd:annotation>
        <xsd:documentation>A marker color used to highlight the well - encoded as RGBA The default value "-1" is #FFFFFFFF so solid white (it is a signed 32 bit value) NOTE: Prior to the 2012-06 schema the default value was incorrect and produced a transparent red not solid white.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element WellSample
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
WellSample is an individual image that has been captured within a Well.
Diagram
Diagram ome_xsd.tmp#WellSample_ID ome_xsd.tmp#WellSample_PositionX ome_xsd.tmp#WellSample_PositionXUnit ome_xsd.tmp#WellSample_PositionY ome_xsd.tmp#WellSample_PositionYUnit ome_xsd.tmp#WellSample_Timepoint ome_xsd.tmp#WellSample_Index ome_xsd.tmp#ImageRef
Properties
content complex
Used by
Element Well
Model
Children ImageRef
Instance
 
<WellSample ID="" Index="" PositionX="" PositionXUnit="reference frame" PositionY="" PositionYUnit="reference frame" Timepoint="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <ImageRef ID="">{0,1}</ImageRef>
</WellSample>
Attributes
QName Type Default Use Annotation
ID WellSampleID required
Index NonNegativeInt required 
This records the order of the well samples. Each
index should be unique for a given plate but they do not
have to be sequential, there may be gaps if part of the
dataset is missing. In the user interface the displayed
value of the index will be calculated modulo the number
of PlateAcquisitions for the plate.
PositionX xsd:float optional 
The X position of the field (image) within the well relative to
the well origin defined on the Plate. Units are set by PositionXUnit.
PositionXUnit UnitsLength reference frame optional 
The units of the position in X - default:reference frame.
PositionY xsd:float optional 
The Y position of the field (image) within the well relative to
the well origin defined on the Plate. Units are set by PositionYUnit.
PositionYUnit UnitsLength reference frame optional 
The units of the position in Y - default:reference frame.
Timepoint xsd:dateTime optional 
The time-point at which the image started to be collected
Source
 
<xsd:element name="WellSample">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>WellSamples</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>WellSample is an individual image that has been captured within a Well.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="ImageRef" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <injected/>
            </xsdfu>
          </xsd:appinfo>
          <xsd:documentation>This is the main link to the core Image element</xsd:documentation>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="WellSampleID"/>
    <xsd:attribute name="PositionX" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The X position of the field (image) within the well relative to the well origin defined on the Plate. Units are set by PositionXUnit.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PositionXUnit" use="optional" default="reference frame" type="UnitsLength">
      <xsd:annotation>
        <xsd:documentation>The units of the position in X - default:reference frame.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PositionY" use="optional" type="xsd:float">
      <xsd:annotation>
        <xsd:documentation>The Y position of the field (image) within the well relative to the well origin defined on the Plate. Units are set by PositionYUnit.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="PositionYUnit" use="optional" default="reference frame" type="UnitsLength">
      <xsd:annotation>
        <xsd:documentation>The units of the position in Y - default:reference frame.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Timepoint" use="optional" type="xsd:dateTime">
      <xsd:annotation>
        <xsd:documentation>The time-point at which the image started to be collected</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Index" use="required" type="NonNegativeInt">
      <xsd:annotation>
        <xsd:documentation>This records the order of the well samples. Each index should be unique for a given plate but they do not have to be sequential, there may be gaps if part of the dataset is missing. In the user interface the displayed value of the index will be calculated modulo the number of PlateAcquisitions for the plate.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element ReagentRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#ReagentRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Element Well
Attributes
QName Type Use
ID ReagentID required
Source
 
<xsd:element name="ReagentRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ReagentID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element PlateAcquisition
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
PlateAcquisition is used to describe a single acquisition run for a plate.
This object is used to record the set of images acquired in a single
acquisition run. The Images for this run are linked to PlateAcquisition
through WellSample.
Diagram
Diagram ome_xsd.tmp#PlateAcquisition_ID ome_xsd.tmp#PlateAcquisition_Name ome_xsd.tmp#PlateAcquisition_EndTime ome_xsd.tmp#PlateAcquisition_StartTime ome_xsd.tmp#PlateAcquisition_MaximumFieldCount ome_xsd.tmp#PlateAcquisition_Description ome_xsd.tmp#WellSampleRef ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element Plate
Model
Children AnnotationRef, Description, WellSampleRef
Instance
 
<PlateAcquisition EndTime="" ID="" MaximumFieldCount="" Name="" StartTime="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <WellSampleRef ID="">{0,unbounded}</WellSampleRef>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</PlateAcquisition>
Attributes
QName Type Use Annotation
EndTime xsd:dateTime optional 
Time when the last image of this acquisition was collected
ID PlateAcquisitionID required
MaximumFieldCount PositiveInt optional 
The maximum number of fields (well samples) in any well
in this PlateAcquisition.
This is only used to speed up user interaction by stopping
the reading of every well sample.
Name xsd:string optional
StartTime xsd:dateTime optional 
Time when the first image of this acquisition was collected
Source
 
<xsd:element name="PlateAcquisition">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>PlateAcquisitions</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>PlateAcquisition is used to describe a single acquisition run for a plate. This object is used to record the set of images acquired in a single acquisition run. The Images for this run are linked to PlateAcquisition through WellSample.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the PlateAcquisition.</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="WellSampleRef" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="PlateAcquisitionID"/>
    <xsd:attribute name="Name" use="optional" type="xsd:string"/>
    <xsd:attribute name="EndTime" use="optional" type="xsd:dateTime">
      <xsd:annotation>
        <xsd:documentation>Time when the last image of this acquisition was collected</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="StartTime" use="optional" type="xsd:dateTime">
      <xsd:annotation>
        <xsd:documentation>Time when the first image of this acquisition was collected</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="MaximumFieldCount" use="optional" type="PositiveInt">
      <xsd:annotation>
        <xsd:documentation>The maximum number of fields (well samples) in any well in this PlateAcquisition. This is only used to speed up user interaction by stopping the reading of every well sample.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element PlateAcquisition / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the PlateAcquisition.
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the PlateAcquisition.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element WellSampleRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The WellSampleRef element is a reference to a WellSample element.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#WellSampleRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID WellSampleID required
Source
 
<xsd:element name="WellSampleRef">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:documentation>The WellSampleRef element is a reference to a WellSample element.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="WellSampleID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Screen
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The Screen element is a grouping for Plates.
The required attribute is the Screen's Name and ID - both must be unique within the document.
The Screen element may contain an ExternalRef attribute that refers to an external database.
A description of the screen may be specified in the Description element.
Screens may contain overlapping sets of Plates i.e.      Screens and Plates have a many-to-many relationship.
Plates contain one or more ScreenRef elements to specify what screens they belong to.
Diagram
Diagram ome_xsd.tmp#Screen_ID ome_xsd.tmp#Screen_Name ome_xsd.tmp#Screen_ProtocolIdentifier ome_xsd.tmp#Screen_ProtocolDescription ome_xsd.tmp#Screen_ReagentSetDescription ome_xsd.tmp#Screen_ReagentSetIdentifier ome_xsd.tmp#Screen_Type ome_xsd.tmp#Screen_Description ome_xsd.tmp#Reagent ome_xsd.tmp#Screen_PlateRef ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Description, PlateRef, Reagent
Instance
 
<Screen ID="" Name="" ProtocolDescription="" ProtocolIdentifier="" ReagentSetDescription="" ReagentSetIdentifier="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <Reagent ID="" Name="" ReagentIdentifier="">{0,unbounded}</Reagent>
  <PlateRef ID="">{0,unbounded}</PlateRef>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Screen>
Attributes
QName Type Use Annotation
ID ScreenID required
Name xsd:string optional
ProtocolDescription xsd:string optional 
A description of the screen protocol; may contain very detailed information to
reproduce some of that found in a screening database.
ProtocolIdentifier xsd:string optional 
A pointer to an externally defined protocol, usually in a screening database.
ReagentSetDescription xsd:string optional 
A description of the set of reagents; may contain very detailed information to
reproduce some of that information found in a screening database.
ReagentSetIdentifier xsd:string optional 
A pointer to an externally defined set of reagents, usually in a screening
database/automation database.
Type xsd:string optional 
A human readable identifier for the screen type; e.g. RNAi, cDNA, SiRNA, etc.
This string is likely to become an enumeration in future releases.
Source
 
<xsd:element name="Screen">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Screens</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Screen element is a grouping for Plates. The required attribute is the Screen's Name and ID - both must be unique within the document. The Screen element may contain an ExternalRef attribute that refers to an external database. A description of the screen may be specified in the Description element. Screens may contain overlapping sets of Plates i.e. Screens and Plates have a many-to-many relationship. Plates contain one or more ScreenRef elements to specify what screens they belong to.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the screen.</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="Reagent" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element name="PlateRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
          <xsd:documentation>The PlateRef element is a reference to a Plate element. Screen elements may have one or more PlateRef elements to define the plates that are part of the screen. Plates may belong to more than one screen.</xsd:documentation>
        </xsd:annotation>
        <xsd:complexType>
          <xsd:complexContent>
            <xsd:extension base="Reference">
              <xsd:attribute name="ID" use="required" type="PlateID"/>
            </xsd:extension>
          </xsd:complexContent>
        </xsd:complexType>
      </xsd:element>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="ScreenID"/>
    <xsd:attribute name="Name" use="optional" type="xsd:string"/>
    <xsd:attribute name="ProtocolIdentifier" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A pointer to an externally defined protocol, usually in a screening database.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ProtocolDescription" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A description of the screen protocol; may contain very detailed information to reproduce some of that found in a screening database.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ReagentSetDescription" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A description of the set of reagents; may contain very detailed information to reproduce some of that information found in a screening database.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ReagentSetIdentifier" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A pointer to an externally defined set of reagents, usually in a screening database/automation database.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Type" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A human readable identifier for the screen type; e.g. RNAi, cDNA, SiRNA, etc. This string is likely to become an enumeration in future releases.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Screen / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the screen.
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the screen.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Reagent
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
Reagent is used to describe a chemical or some other physical experimental parameter.
Diagram
Diagram ome_xsd.tmp#Reagent_ID ome_xsd.tmp#Reagent_Name ome_xsd.tmp#Reagent_ReagentIdentifier ome_xsd.tmp#Reagent_Description ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element Screen
Model
Children AnnotationRef, Description
Instance
 
<Reagent ID="" Name="" ReagentIdentifier="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Reagent>
Attributes
QName Type Use Annotation
ID ReagentID required
Name xsd:string optional 
A short name for the reagent
ReagentIdentifier xsd:string optional 
This is a reference to an external (to OME) representation of the Reagent.
It serves as a foreign key into an external database. - It is sometimes referred to as ExternalIdentifier.
Source
 
<xsd:element name="Reagent">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Reagents</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Reagent is used to describe a chemical or some other physical experimental parameter.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A long description for the reagent.</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="ReagentID"/>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A short name for the reagent</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ReagentIdentifier" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>This is a reference to an external (to OME) representation of the Reagent. It serves as a foreign key into an external database. - It is sometimes referred to as ExternalIdentifier.</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Reagent / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A long description for the reagent.
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A long description for the reagent.</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Screen / PlateRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The PlateRef element is a reference to a Plate element.
Screen elements may have one or more PlateRef elements to define the plates that are part of the screen.
Plates may belong to more than one screen.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Screen_Screen_PlateRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs unbounded
Attributes
QName Type Use
ID PlateID required
Source
 
<xsd:element name="PlateRef" minOccurs="0" maxOccurs="unbounded">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <manytomany/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The PlateRef element is a reference to a Plate element. Screen elements may have one or more PlateRef elements to define the plates that are part of the screen. Plates may belong to more than one screen.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="PlateID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Experimenter
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
This element describes a person who performed an imaging experiment.
This person may also be a user of the OME system, in which case the UserName element contains their login name.
Experimenters may belong to one or more groups which are specified using one or more ExperimenterGroupRef elements.
Diagram
Diagram ome_xsd.tmp#Experimenter_ID ome_xsd.tmp#Experimenter_FirstName ome_xsd.tmp#Experimenter_MiddleName ome_xsd.tmp#Experimenter_LastName ome_xsd.tmp#Experimenter_Email ome_xsd.tmp#Experimenter_Institution ome_xsd.tmp#Experimenter_UserName ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef
Instance
 
<Experimenter Email="" FirstName="" ID="" Institution="" LastName="" MiddleName="" UserName="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Experimenter>
Attributes
QName Type Use Annotation
Email xsd:string optional 
A person's email address. [valid email address as string]
FirstName xsd:string optional 
First name, sometime called christian name or given name or forename. [plain text string]
ID ExperimenterID required
Institution xsd:string optional 
A person's Institution
The organizing structure that people belong to other than groups.  A university, or company, etc.
We do not specify a department element, and do not mean for Institution to be used in this way.
We simply wish to say XXX at YYY.  Where YYY has a better chance of being tied to a geographically fixed location
and of being more recognizable than a group of experimenters. [plain text string]
LastName xsd:string optional 
A person's last name sometimes called surname or family name. [plain text string]
MiddleName xsd:string optional 
Any other names. [plain text string]
UserName xsd:string optional 
This is the username of the experimenter (in a 'unix' or 'database' sense). [plain text string]
Source
 
<xsd:element name="Experimenter">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Experimenters</plural>
        <global/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element describes a person who performed an imaging experiment. This person may also be a user of the OME system, in which case the UserName element contains their login name. Experimenters may belong to one or more groups which are specified using one or more ExperimenterGroupRef elements.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="ExperimenterID"/>
    <xsd:attribute name="FirstName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>First name, sometime called christian name or given name or forename. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="MiddleName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>Any other names. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="LastName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A person's last name sometimes called surname or family name. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Email" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A person's email address. [valid email address as string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="Institution" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:documentation>A person's Institution The organizing structure that people belong to other than groups. A university, or company, etc. We do not specify a department element, and do not mean for Institution to be used in this way. We simply wish to say XXX at YYY. Where YYY has a better chance of being tied to a geographically fixed location and of being more recognizable than a group of experimenters. [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="UserName" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:appinfo>
          <xsdfu xmlns="">
            <unique/>
          </xsdfu>
        </xsd:appinfo>
        <xsd:documentation>This is the username of the experimenter (in a 'unix' or 'database' sense). [plain text string]</xsd:documentation>
      </xsd:annotation>
    </xsd:attribute>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element ExperimenterGroup
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The ExperimenterGroupID is required.
Information should ideally be specified for at least one Leader as a contact for the group.
The Leaders are themselves Experimenters.
Diagram
Diagram ome_xsd.tmp#ExperimenterGroup_Name ome_xsd.tmp#ExperimenterGroup_ID ome_xsd.tmp#ExperimenterGroup_Description ome_xsd.tmp#ExperimenterRef ome_xsd.tmp#Leader ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Description, ExperimenterRef, Leader
Instance
 
<ExperimenterGroup ID="" Name="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Description>{0,1}</Description>
  <ExperimenterRef ID="">{0,unbounded}</ExperimenterRef>
  <Leader ID="">{0,unbounded}</Leader>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</ExperimenterGroup>
Attributes
QName Type Use
ID ExperimenterGroupID required
Name xsd:string optional
Source
 
<xsd:element name="ExperimenterGroup">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>ExperimenterGroups</plural>
        <global/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The ExperimenterGroupID is required. Information should ideally be specified for at least one Leader as a contact for the group. The Leaders are themselves Experimenters.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element name="Description" minOccurs="0" maxOccurs="1">
        <xsd:annotation>
          <xsd:documentation>A description for the group. [plain-text multi-line string]</xsd:documentation>
        </xsd:annotation>
        <xsd:simpleType>
          <xsd:restriction base="xsd:string">
            <xsd:whiteSpace value="preserve"/>
          </xsd:restriction>
        </xsd:simpleType>
      </xsd:element>
      <xsd:element ref="ExperimenterRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
              <childordered/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
      <xsd:element ref="Leader" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="Name" use="optional" type="xsd:string">
      <xsd:annotation>
        <xsd:appinfo>
          <xsdfu xmlns="">
            <unique/>
          </xsdfu>
        </xsd:appinfo>
      </xsd:annotation>
    </xsd:attribute>
    <xsd:attribute name="ID" use="required" type="ExperimenterGroupID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element ExperimenterGroup / Description
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description for the group. [plain-text multi-line string]
Diagram
Diagram
Type restriction of xsd:string
Properties
content simple
minOccurs 0
maxOccurs 1
Facets
whiteSpace preserve
Source
 
<xsd:element name="Description" minOccurs="0" maxOccurs="1">
  <xsd:annotation>
    <xsd:documentation>A description for the group. [plain-text multi-line string]</xsd:documentation>
  </xsd:annotation>
  <xsd:simpleType>
    <xsd:restriction base="xsd:string">
      <xsd:whiteSpace value="preserve"/>
    </xsd:restriction>
  </xsd:simpleType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Leader
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
Contact information for a ExperimenterGroup leader specified using a reference
to an Experimenter element defined elsewhere in the document.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#Leader_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Attributes
QName Type Use
ID ExperimenterID required
Source
 
<xsd:element name="Leader">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Leaders</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Contact information for a ExperimenterGroup leader specified using a reference to an Experimenter element defined elsewhere in the document.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="ExperimenterID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Instrument
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
This element describes the instrument used to capture the Image.
It is primarily a container for manufacturer's model and catalog
numbers for the Microscope, LightSource, Detector, Objective and
Filters components.
The Objective element contains the additional elements LensNA and Magnification.
The Filters element can be composed either of separate excitation,
emission filters and a dichroic mirror or a single filter set.
Within the Image itself, a reference is made to this one Filter element.
There may be multiple light sources, detectors, objectives and filters on a microscope.
Each of these has their own ID attribute, which can be referred to from Channel.
It is understood that the light path configuration can be different
for each channel, but cannot be different for each timepoint or
each plane of an XYZ stack.
Diagram
Diagram ome_xsd.tmp#Instrument_ID ome_xsd.tmp#Microscope ome_xsd.tmp#LightSourceGroup ome_xsd.tmp#Detector ome_xsd.tmp#Objective ome_xsd.tmp#FilterSet ome_xsd.tmp#Filter ome_xsd.tmp#Dichroic ome_xsd.tmp#AnnotationRef
Properties
content complex
Used by
Element OME
Model
Children AnnotationRef, Detector, Dichroic, Filter, FilterSet, LightSourceGroup, Microscope, Objective
Instance
 
<Instrument ID="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <Microscope LotNumber="" Manufacturer="" Model="" SerialNumber="" Type="">{0,1}</Microscope>
  <LightSourceGroup ID="" LotNumber="" Manufacturer="" Model="" Power="" PowerUnit="mW" SerialNumber="">{0,unbounded}</LightSourceGroup>
  <Detector AmplificationGain="" Gain="" ID="" LotNumber="" Manufacturer="" Model="" Offset="" SerialNumber="" Type="" Voltage="" VoltageUnit="V" Zoom="">{0,unbounded}</Detector>
  <Objective CalibratedMagnification="" Correction="" ID="" Immersion="" Iris="" LensNA="" LotNumber="" Manufacturer="" Model="" NominalMagnification="" SerialNumber="" WorkingDistance="" WorkingDistanceUnit="µm">{0,unbounded}</Objective>
  <FilterSet ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="">{0,unbounded}</FilterSet>
  <Filter FilterWheel="" ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="" Type="">{0,unbounded}</Filter>
  <Dichroic ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="">{0,unbounded}</Dichroic>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Instrument>
Attributes
QName Type Use
ID InstrumentID required
Source
 
<xsd:element name="Instrument">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Instruments</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>This element describes the instrument used to capture the Image. It is primarily a container for manufacturer's model and catalog numbers for the Microscope, LightSource, Detector, Objective and Filters components. The Objective element contains the additional elements LensNA and Magnification. The Filters element can be composed either of separate excitation, emission filters and a dichroic mirror or a single filter set. Within the Image itself, a reference is made to this one Filter element. There may be multiple light sources, detectors, objectives and filters on a microscope. Each of these has their own ID attribute, which can be referred to from Channel. It is understood that the light path configuration can be different for each channel, but cannot be different for each timepoint or each plane of an XYZ stack.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:sequence>
      <xsd:element ref="Microscope" minOccurs="0" maxOccurs="1"/>
      <xsd:element ref="LightSourceGroup" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Detector" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Objective" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="FilterSet" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Filter" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="Dichroic" minOccurs="0" maxOccurs="unbounded"/>
      <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
        <xsd:annotation>
          <xsd:appinfo>
            <xsdfu xmlns="">
              <manytomany/>
            </xsdfu>
          </xsd:appinfo>
        </xsd:annotation>
      </xsd:element>
    </xsd:sequence>
    <xsd:attribute name="ID" use="required" type="InstrumentID"/>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Microscope
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The microscope's manufacturer specification.
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Microscope_Type
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Attributes
QName Type Use Annotation
LotNumber xsd:string optional 
The lot number of the component. [plain text string]
Manufacturer xsd:string optional 
The manufacturer of the component. [plain text string]
Model xsd:string optional 
The Model of the component. [plain text string]
SerialNumber xsd:string optional 
The serial number of the component. [plain text string]
Type restriction of xsd:string optional
Source
 
<xsd:element name="Microscope">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Microscopes</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The microscope's manufacturer specification.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:attribute name="Type" use="optional">
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="Upright"/>
              <xsd:enumeration value="Inverted"/>
              <xsd:enumeration value="Dissection"/>
              <xsd:enumeration value="Electrophysiology"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element LightSourceGroup
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#LightSource_ID ome_xsd.tmp#LightSource_Power ome_xsd.tmp#LightSource_PowerUnit ome_xsd.tmp#AnnotationRef ome_xsd.tmp#LightSource ome_xsd.tmp#Arc ome_xsd.tmp#Filament ome_xsd.tmp#GenericExcitationSource ome_xsd.tmp#Laser ome_xsd.tmp#LightEmittingDiode
Type LightSource
Type hierarchy
Properties
content complex
abstract true
Substitution Group
Used by
Element Instrument
Model
Children AnnotationRef
Instance
 
<LightSourceGroup ID="" LotNumber="" Manufacturer="" Model="" Power="" PowerUnit="mW" SerialNumber="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</LightSourceGroup>
Attributes
QName Type Default Use Annotation
ID LightSourceID required 
A LightSource ID must be specified for each light source, and the individual
light sources can be referred to by their LightSource IDs (eg from Channel).
LotNumber xsd:string optional 
The lot number of the component. [plain text string]
Manufacturer xsd:string optional 
The manufacturer of the component. [plain text string]
Model xsd:string optional 
The Model of the component. [plain text string]
Power xsd:float optional 
The light-source power. Units are set by PowerUnit.
PowerUnit UnitsPower mW optional 
The units of the Power - default:milliwatts[mW].
SerialNumber xsd:string optional 
The serial number of the component. [plain text string]
Source
 
<xsd:element name="LightSourceGroup" abstract="true" type="LightSource"/>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Detector
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The type of detector used to capture the image.
        The Detector ID can be used as a reference within the Channel element in the Image element.
        The values stored in Detector represent the fixed values,
        variable values modified during the acquisition go in DetectorSettings

        Each attribute now has an indication of what type of detector
        it applies to. This is preparatory work for cleaning up and
        possibly splitting this object into sub-types.
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Detector_Gain ome_xsd.tmp#Detector_Voltage ome_xsd.tmp#Detector_VoltageUnit ome_xsd.tmp#Detector_Offset ome_xsd.tmp#Detector_Zoom ome_xsd.tmp#Detector_AmplificationGain ome_xsd.tmp#Detector_ID ome_xsd.tmp#Detector_Type ome_xsd.tmp#AnnotationRef
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Model
Children AnnotationRef
Instance
 
<Detector AmplificationGain="" Gain="" ID="" LotNumber="" Manufacturer="" Model="" Offset="" SerialNumber="" Type="" Voltage="" VoltageUnit="V" Zoom="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Detector>
Attributes
QName Type Default Use Annotation
AmplificationGain xsd:float optional 
Gain applied to the detector signal.
This is the electronic gain (as apposed to the inherent gain) that is set for the detector. [units:none] {used:EMCCD#EMGain}
Gain xsd:float optional 
The Detector Gain for this detector, as a float. [units:none] {used:CCD,EMCCD,PMT}
ID DetectorID required
LotNumber xsd:string optional 
The lot number of the component. [plain text string]
Manufacturer xsd:string optional 
The manufacturer of the component. [plain text string]
Model xsd:string optional 
The Model of the component. [plain text string]
Offset xsd:float optional 
The Detector Offset. [units:none] {used:CCD,EMCCD}
SerialNumber xsd:string optional 
The serial number of the component. [plain text string]
Type restriction of xsd:string optional 
The Type of detector. E.g. CCD, PMT, EMCCD etc.
Voltage xsd:float optional 
The Voltage of the detector (e.g. PMT voltage) as a float. {used:PMT}
Units are set by VoltageUnit.
VoltageUnit UnitsElectricPotential V optional 
The units of the Voltage - default:volts[V].
Zoom xsd:float optional 
The fixed Zoom for a detector. [units:none] {used:PMT}
Source
 
<xsd:element name="Detector">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Detectors</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The type of detector used to capture the image. The Detector ID can be used as a reference within the Channel element in the Image element. The values stored in Detector represent the fixed values, variable values modified during the acquisition go in DetectorSettings Each attribute now has an indication of what type of detector it applies to. This is preparatory work for cleaning up and possibly splitting this object into sub-types.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:sequence>
          <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
            <xsd:annotation>
              <xsd:appinfo>
                <xsdfu xmlns="">
                  <manytomany/>
                </xsdfu>
              </xsd:appinfo>
            </xsd:annotation>
          </xsd:element>
        </xsd:sequence>
        <xsd:attribute name="Gain" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Detector Gain for this detector, as a float. [units:none] {used:CCD,EMCCD,PMT}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Voltage" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Voltage of the detector (e.g. PMT voltage) as a float. {used:PMT} Units are set by VoltageUnit.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="VoltageUnit" use="optional" default="V" type="UnitsElectricPotential">
          <xsd:annotation>
            <xsd:documentation>The units of the Voltage - default:volts[V].</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Offset" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The Detector Offset. [units:none] {used:CCD,EMCCD}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Zoom" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The fixed Zoom for a detector. [units:none] {used:PMT}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="AmplificationGain" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>Gain applied to the detector signal. This is the electronic gain (as apposed to the inherent gain) that is set for the detector. [units:none] {used:EMCCD#EMGain}</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="ID" use="required" type="DetectorID"/>
        <xsd:attribute name="Type" use="optional">
          <xsd:annotation>
            <xsd:documentation>The Type of detector. E.g. CCD, PMT, EMCCD etc.</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="CCD"/>
              <!-- Charge-Coupled Device -->
              <xsd:enumeration value="IntensifiedCCD"/>
              <xsd:enumeration value="AnalogVideo"/>
              <xsd:enumeration value="PMT"/>
              <!-- Photomultiplier tube -->
              <xsd:enumeration value="Photodiode"/>
              <xsd:enumeration value="Spectroscopy"/>
              <xsd:enumeration value="LifetimeImaging"/>
              <xsd:enumeration value="CorrelationSpectroscopy"/>
              <xsd:enumeration value="FTIR"/>
              <!-- Fourier transform infrared spectroscopy -->
              <xsd:enumeration value="EMCCD"/>
              <!-- Electron Multiplying Charge Coupled Device -->
              <xsd:enumeration value="APD"/>
              <!-- Avalanche Photodiode -->
              <xsd:enumeration value="CMOS"/>
              <!-- complementary metal oxide semiconductor -->
              <xsd:enumeration value="EBCCD"/>
              <!-- electron-bombarded charge-coupled device -->
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Objective
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A description of the microscope's objective lens.
Required elements include the lens numerical aperture,
and the magnification, both of which a floating
point (real) numbers.
The values are those that are fixed for a particular
objective: either because it has been manufactured to
this specification or the value has been measured on
this particular objective.
Correction: This is the type of correction coating applied to this lens.
Immersion: This is the types of immersion medium the lens is designed to
work with. It is not the same as 'Medium' in ObjectiveRef (a
single type) as here Immersion can have compound values like 'Multi'.
LensNA: The numerical aperture of the lens (as a float)
NominalMagnification: The specified magnification e.g. x10
CalibratedMagnification: The measured magnification e.g. x10.3
WorkingDistance: WorkingDistance of the lens.
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Objective_ID ome_xsd.tmp#Objective_Correction ome_xsd.tmp#Objective_Immersion ome_xsd.tmp#Objective_LensNA ome_xsd.tmp#Objective_NominalMagnification ome_xsd.tmp#Objective_CalibratedMagnification ome_xsd.tmp#Objective_WorkingDistance ome_xsd.tmp#Objective_WorkingDistanceUnit ome_xsd.tmp#Objective_Iris ome_xsd.tmp#AnnotationRef
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Model
Children AnnotationRef
Instance
 
<Objective CalibratedMagnification="" Correction="" ID="" Immersion="" Iris="" LensNA="" LotNumber="" Manufacturer="" Model="" NominalMagnification="" SerialNumber="" WorkingDistance="" WorkingDistanceUnit="µm" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Objective>
Attributes
QName Type Default Use Annotation
CalibratedMagnification xsd:float optional 
The magnification of the lens as measured by a calibration process- i.e. '59.987' for a 60X lens. [units:none]
Correction restriction of xsd:string optional 
The correction applied to the lens
ID ObjectiveID required
Immersion restriction of xsd:string optional 
The immersion medium the lens is designed for
Iris xsd:boolean optional 
Records whether or not the objective was fitted with an Iris. [flag]
LensNA xsd:float optional 
The numerical aperture of the lens expressed as a floating point (real) number.
Expected range 0.02 - 1.5 [units:none]
LotNumber xsd:string optional 
The lot number of the component. [plain text string]
Manufacturer xsd:string optional 
The manufacturer of the component. [plain text string]
Model xsd:string optional 
The Model of the component. [plain text string]
NominalMagnification xsd:float optional 
The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. [units:none]
Note: The type of this has been changed from int to float to allow
the specification of additional lenses e.g. 0.5X lens
SerialNumber xsd:string optional 
The serial number of the component. [plain text string]
WorkingDistance xsd:float optional 
The working distance of the lens expressed as a floating point (real) number. Units are set by WorkingDistanceUnit.
WorkingDistanceUnit UnitsLength µm optional 
The units of the working distance - default:microns[µm].
Source
 
<xsd:element name="Objective">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Objectives</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>A description of the microscope's objective lens. Required elements include the lens numerical aperture, and the magnification, both of which a floating point (real) numbers. The values are those that are fixed for a particular objective: either because it has been manufactured to this specification or the value has been measured on this particular objective. Correction: This is the type of correction coating applied to this lens. Immersion: This is the types of immersion medium the lens is designed to work with. It is not the same as 'Medium' in ObjectiveRef (a single type) as here Immersion can have compound values like 'Multi'. LensNA: The numerical aperture of the lens (as a float) NominalMagnification: The specified magnification e.g. x10 CalibratedMagnification: The measured magnification e.g. x10.3 WorkingDistance: WorkingDistance of the lens.</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:sequence>
          <xsd:element ref="AnnotationRef" minOccurs="0" maxOccurs="unbounded">
            <xsd:annotation>
              <xsd:appinfo>
                <xsdfu xmlns="">
                  <manytomany/>
                </xsdfu>
              </xsd:appinfo>
            </xsd:annotation>
          </xsd:element>
        </xsd:sequence>
        <xsd:attribute name="ID" use="required" type="ObjectiveID"/>
        <xsd:attribute name="Correction" use="optional">
          <xsd:annotation>
            <xsd:documentation>The correction applied to the lens</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="UV"/>
              <xsd:enumeration value="PlanApo"/>
              <xsd:enumeration value="PlanFluor"/>
              <xsd:enumeration value="SuperFluor"/>
              <xsd:enumeration value="VioletCorrected"/>
              <xsd:enumeration value="Achro"/>
              <xsd:enumeration value="Achromat"/>
              <xsd:enumeration value="Fluor"/>
              <xsd:enumeration value="Fl"/>
              <xsd:enumeration value="Fluar"/>
              <xsd:enumeration value="Neofluar"/>
              <xsd:enumeration value="Fluotar"/>
              <xsd:enumeration value="Apo"/>
              <xsd:enumeration value="PlanNeofluar"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
        <xsd:attribute name="Immersion" use="optional">
          <xsd:annotation>
            <xsd:documentation>The immersion medium the lens is designed for</xsd:documentation>
          </xsd:annotation>
          <xsd:simpleType>
            <xsd:restriction base="xsd:string">
              <xsd:enumeration value="Oil"/>
              <xsd:enumeration value="Water"/>
              <xsd:enumeration value="WaterDipping"/>
              <xsd:enumeration value="Air"/>
              <xsd:enumeration value="Multi"/>
              <xsd:enumeration value="Glycerol"/>
              <xsd:enumeration value="Other"/>
            </xsd:restriction>
          </xsd:simpleType>
        </xsd:attribute>
        <xsd:attribute name="LensNA" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The numerical aperture of the lens expressed as a floating point (real) number. Expected range 0.02 - 1.5 [units:none]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="NominalMagnification" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The magnification of the lens as specified by the manufacturer - i.e. '60' is a 60X lens. [units:none] Note: The type of this has been changed from int to float to allow the specification of additional lenses e.g. 0.5X lens</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="CalibratedMagnification" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The magnification of the lens as measured by a calibration process- i.e. '59.987' for a 60X lens. [units:none]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="WorkingDistance" use="optional" type="xsd:float">
          <xsd:annotation>
            <xsd:documentation>The working distance of the lens expressed as a floating point (real) number. Units are set by WorkingDistanceUnit.</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="WorkingDistanceUnit" use="optional" default="µm" type="UnitsLength">
          <xsd:annotation>
            <xsd:documentation>The units of the working distance - default:microns[µm].</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
        <xsd:attribute name="Iris" use="optional" type="xsd:boolean">
          <xsd:annotation>
            <xsd:documentation>Records whether or not the objective was fitted with an Iris. [flag]</xsd:documentation>
          </xsd:annotation>
        </xsd:attribute>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element FilterSet
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
Filter set manufacturer specification
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#FilterSet_ID ome_xsd.tmp#FilterSet_ExcitationFilterRef ome_xsd.tmp#DichroicRef ome_xsd.tmp#FilterSet_EmissionFilterRef
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Model
Children DichroicRef, EmissionFilterRef, ExcitationFilterRef
Instance
 
<FilterSet ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <ExcitationFilterRef ID="">{0,unbounded}</ExcitationFilterRef>
  <DichroicRef ID="">{0,1}</DichroicRef>
  <EmissionFilterRef ID="">{0,unbounded}</EmissionFilterRef>
</FilterSet>
Attributes
QName Type Use Annotation
ID FilterSetID required
LotNumber xsd:string optional 
The lot number of the component. [plain text string]
Manufacturer xsd:string optional 
The manufacturer of the component. [plain text string]
Model xsd:string optional 
The Model of the component. [plain text string]
SerialNumber xsd:string optional 
The serial number of the component. [plain text string]
Source
 
<xsd:element name="FilterSet">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>FilterSets</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>Filter set manufacturer specification</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="ManufacturerSpec">
        <xsd:sequence>
          <xsd:element name="ExcitationFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
            <xsd:annotation>
              <xsd:appinfo>
                <xsdfu xmlns="">
                  <plural>ExcitationFilters</plural>
                  <manytomany/>
                </xsdfu>
              </xsd:appinfo>
              <xsd:documentation>The Filters placed in the Excitation light path.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
          <xsd:element ref="DichroicRef" minOccurs="0" maxOccurs="1"/>
          <xsd:element name="EmissionFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
            <xsd:annotation>
              <xsd:appinfo>
                <xsdfu xmlns="">
                  <plural>EmissionFilters</plural>
                  <manytomany/>
                </xsdfu>
              </xsd:appinfo>
              <xsd:documentation>The Filters placed in the Emission light path.</xsd:documentation>
            </xsd:annotation>
          </xsd:element>
        </xsd:sequence>
        <xsd:attribute name="ID" use="required" type="FilterSetID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element FilterSet / ExcitationFilterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The Filters placed in the Excitation light path.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterRef_ID ome_xsd.tmp#FilterRef
Type FilterRef
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs unbounded
Attributes
QName Type Use
ID FilterID required
Source
 
<xsd:element name="ExcitationFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>ExcitationFilters</plural>
        <manytomany/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Filters placed in the Excitation light path.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element DichroicRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#DichroicRef_ID
Type extension of Reference
Type hierarchy
Properties
content complex
Used by
Elements FilterSet, LightPath
Attributes
QName Type Use
ID DichroicID required
Source
 
<xsd:element name="DichroicRef">
  <!-- top level definition -->
  <xsd:complexType>
    <xsd:complexContent>
      <xsd:extension base="Reference">
        <xsd:attribute name="ID" use="required" type="DichroicID"/>
      </xsd:extension>
    </xsd:complexContent>
  </xsd:complexType>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element FilterSet / EmissionFilterRef
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
The Filters placed in the Emission light path.
Diagram
Diagram ome_xsd.tmp#Reference ome_xsd.tmp#FilterRef_ID ome_xsd.tmp#FilterRef
Type FilterRef
Type hierarchy
Properties
content complex
minOccurs 0
maxOccurs unbounded
Attributes
QName Type Use
ID FilterID required
Source
 
<xsd:element name="EmissionFilterRef" type="FilterRef" minOccurs="0" maxOccurs="unbounded">
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>EmissionFilters</plural>
        <manytomany/>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>The Filters placed in the Emission light path.</xsd:documentation>
  </xsd:annotation>
</xsd:element>
Schema location http://www.openmicroscopy.org/Schemas/OME/2016-06/ome.xsd
Element Filter
Namespace http://www.openmicroscopy.org/Schemas/OME/2016-06
Annotations
 
A filter is either an excitation or emission filters.
There should be one filter element specified per wavelength in the image.
The channel number associated with a filter set is specified in Channel.
It is based on the FilterSpec type, so has the required attributes Manufacturer, Model, and LotNumber.
It may also contain a Type attribute which may be set to
'LongPass', 'ShortPass', 'BandPass', 'MultiPass',
'Dichroic', 'NeutralDensity', 'Tuneable' or 'Other'.
It can be associated with an optional FilterWheel - Note: this is not the same as a FilterSet
Diagram
Diagram ome_xsd.tmp#ManufacturerSpec_Manufacturer ome_xsd.tmp#ManufacturerSpec_Model ome_xsd.tmp#ManufacturerSpec_SerialNumber ome_xsd.tmp#ManufacturerSpec_LotNumber ome_xsd.tmp#ManufacturerSpec ome_xsd.tmp#Filter_Type ome_xsd.tmp#Filter_FilterWheel ome_xsd.tmp#Filter_ID ome_xsd.tmp#TransmittanceRange ome_xsd.tmp#AnnotationRef
Type extension of ManufacturerSpec
Type hierarchy
Properties
content complex
Used by
Element Instrument
Model
Children AnnotationRef, TransmittanceRange
Instance
 
<Filter FilterWheel="" ID="" LotNumber="" Manufacturer="" Model="" SerialNumber="" Type="" xmlns="http://www.openmicroscopy.org/Schemas/OME/2016-06">
  <TransmittanceRange CutIn="" CutInTolerance="" CutInToleranceUnit="nm" CutInUnit="nm" CutOut="" CutOutTolerance="" CutOutToleranceUnit="nm" CutOutUnit="nm" Transmittance="">{0,1}</TransmittanceRange>
  <AnnotationRef ID="">{0,unbounded}</AnnotationRef>
</Filter>
Attributes
QName Type Use Annotation
FilterWheel xsd:string optional 
A filter 'wheel' in OME can refer to any arrangement of filters in a filter holder of any shape. It could, for example, be a filter slider. [plain text string]
ID FilterID required
LotNumber xsd:string optional 
The lot number of the component. [plain text string]
Manufacturer xsd:string optional 
The manufacturer of the component. [plain text string]
Model xsd:string optional 
The Model of the component. [plain text string]
SerialNumber xsd:string optional 
The serial number of the component. [plain text string]
Type restriction of xsd:string optional
Source
 
<xsd:element name="Filter">
  <!-- top level definition -->
  <xsd:annotation>
    <xsd:appinfo>
      <xsdfu xmlns="">
        <plural>Filters</plural>
      </xsdfu>
    </xsd:appinfo>
    <xsd:documentation>A filter is either an excitation or emission filters. There should be one filter element specified per wavelength in the image. The channel number associated with a filter set is specified in Channel. It is based on the FilterSpec type, so has the required attributes Manufacturer, Model, and LotNumber. It may also contain a Type attribute which may be set to 'LongPass', 'ShortPass', 'BandPass', 'MultiPass', 'Dichroic', 'NeutralDensity', 'Tuneable' or 'Other'. It can be associated with an optional FilterWheel - Note: this is not the same as a FilterSet</xsd:documentation>
  </xsd:annotation>
  <xsd:complexType>
    <