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problem installation Omero.server

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You should find answers to any basic questions about using the clients there.

Re: problem installation Omero.server

Postby cxallan » Tue May 29, 2012 10:08 am

chettia02 wrote:but now how to create groups of Omero each client username and password ??????


There are movies on the features page that explain all about managing users and groups:

http://www.openmicroscopy.org/site/prod ... ature-list
cxallan
Site Admin
 
Posts: 509
Joined: Fri May 01, 2009 8:07 am

Re: problem installation Omero.server

Postby chettia02 » Tue May 29, 2012 10:27 am

I can not open now OMERO.insight in a serveur why...???
chettia02
 
Posts: 113
Joined: Thu May 24, 2012 8:24 am

Re: problem installation Omero.server

Postby cxallan » Tue May 29, 2012 10:43 am

chettia02 wrote:I can not open now OMERO.insight in a serveur why...???


No idea. You'll have to be more specific.
cxallan
Site Admin
 
Posts: 509
Joined: Fri May 01, 2009 8:07 am

Re: problem installation Omero.server

Postby chettia02 » Tue May 29, 2012 11:20 am

I can not open Omero

has omero.insight each time when I find this file the error


#
# A fatal error has been detected by the Java Runtime Environment:
#
# EXCEPTION_ACCESS_VIOLATION (0xc0000005) at pc=0x745f1e80, pid=2716, tid=4384
#
# JRE version: 7.0_04-b22
# Java VM: Java HotSpot(TM) Client VM (23.0-b21 mixed mode, sharing windows-x86 )
# Problematic frame:
# C [MSVCR100.dll+0x1e80] memcpy+0x0
#
# Core dump written. Default location: C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\hs_err_pid2716.mdmp
#
# If you would like to submit a bug report, please visit:
# http://bugreport.sun.com/bugreport/crash.jsp
#

--------------- T H R E A D ---------------

Current thread (0x04d84000): JavaThread "Initializer" [_thread_in_vm, id=4384, stack(0x04cb0000,0x04d00000)]

siginfo: ExceptionCode=0xc0000005, ExceptionInformation=0x00000008 0x745f1e80

Registers:
EAX=0x04cfde70, EBX=0x04cfde70, ECX=0x00000000, EDX=0x154bbf74
ESP=0x04cfde14, EBP=0x04cfde3c, ESI=0x04d84000, EDI=0x00000000
EIP=0x745f1e80, EFLAGS=0x00010246

Top of Stack: (sp=0x04cfde14)
0x04cfde14: 7434c0e3 04cfde70 154bbf74 00000035
0x04cfde24: 00000035 04d84128 04d84000 00000000
0x04cfde34: 04cfde48 7434897d 04cfe278 74211ae7
0x04cfde44: 04d84000 04cfe298 00000000 00000035
0x04cfde54: 04cfde70 04d84000 04cfe2a0 00000000
0x04cfde64: 04cfe298 047f1820 00000000 2f67726f
0x04cfde74: 63617061 6c2f6568 6a34676f 6e6f632f
0x04cfde84: 2f676966 706f7250 79747265 74746553

Instructions: (pc=0x745f1e80)
0x745f1e60: 72 72 6f 72 00 90 90 90 90 90 90 90 90 90 90 90
0x745f1e70: 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90 90
0x745f1e80: 55 8b ec 57 56 8b 75 0c 8b 4d 10 8b 7d 08 8b c1
0x745f1e90: 8b d1 03 c6 3b fe 76 08 3b f8 0f 82 a0 01 00 00


Register to memory mapping:

EAX=0x04cfde70 is pointing into the stack for thread: 0x04d84000
EBX=0x04cfde70 is pointing into the stack for thread: 0x04d84000
ECX=0x00000000 is an unknown value
EDX=
[error occurred during error reporting (printing register info), id 0xc0000005]

Stack: [0x04cb0000,0x04d00000], sp=0x04cfde14, free space=311k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native code)
C [MSVCR100.dll+0x1e80] memcpy+0x0
C [zip.dll+0x1ae7] Java_java_util_zip_ZipFile_getEntry+0x7f
J java.util.zip.ZipFile.getEntry(J[BZ)J
J java.util.zip.ZipFile.getEntry(Ljava/lang/String;)Ljava/util/zip/ZipEntry;
j java.net.URLClassLoader$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
V [jvm.dll+0x1296da]
V [jvm.dll+0x1d837e]
V [jvm.dll+0x12975d]
V [jvm.dll+0xd914a]
C [java.dll+0x1061] Java_java_security_AccessController_doPrivileged__Ljava_security_PrivilegedExceptionAction_2Ljava_security_AccessControlContext_2+0x17
j java.net.URLClassLoader.findClass(Ljava/lang/String;)Ljava/lang/Class;+13
j java.lang.ClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+70
j sun.misc.Launcher$AppClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+36
j java.lang.ClassLoader.loadClass(Ljava/lang/String;)Ljava/lang/Class;+3
v ~StubRoutines::call_stub
V [jvm.dll+0x1296da]
V [jvm.dll+0x1d837e]
V [jvm.dll+0x1298c3]
V [jvm.dll+0x12999f]
V [jvm.dll+0x2c055]
V [jvm.dll+0x2d1b8]
V [jvm.dll+0x2d87b]
V [jvm.dll+0x2d8ca]
V [jvm.dll+0xcfc65]
V [jvm.dll+0xd11fb]
C [verify.dll+0x15cd]
C [verify.dll+0x1d53]
C [verify.dll+0x2c67]
C [verify.dll+0x4bee]
C [verify.dll+0x4f32] VerifyClassForMajorVersion+0x2b2

Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
J java.util.zip.ZipFile.getEntry(J[BZ)J
J java.util.zip.ZipFile.getEntry(Ljava/lang/String;)Ljava/util/zip/ZipEntry;
J java.util.jar.JarFile.getEntry(Ljava/lang/String;)Ljava/util/zip/ZipEntry;
J sun.misc.URLClassPath$JarLoader.getResource(Ljava/lang/String;Z)Lsun/misc/Resource;
J sun.misc.URLClassPath.getResource(Ljava/lang/String;Z)Lsun/misc/Resource;
j java.net.URLClassLoader$1.run()Ljava/lang/Class;+26
j java.net.URLClassLoader$1.run()Ljava/lang/Object;+1
v ~StubRoutines::call_stub
j java.security.AccessController.doPrivileged(Ljava/security/PrivilegedExceptionAction;Ljava/security/AccessControlContext;)Ljava/lang/Object;+0
j java.net.URLClassLoader.findClass(Ljava/lang/String;)Ljava/lang/Class;+13
j java.lang.ClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+70
j sun.misc.Launcher$AppClassLoader.loadClass(Ljava/lang/String;Z)Ljava/lang/Class;+36
j java.lang.ClassLoader.loadClass(Ljava/lang/String;)Ljava/lang/Class;+3
v ~StubRoutines::call_stub
j org.apache.log4j.PropertyConfigurator.parseAppender(Ljava/util/Properties;Ljava/lang/String;)Lorg/apache/log4j/Appender;+266
j org.apache.log4j.PropertyConfigurator.parseCategory(Ljava/util/Properties;Lorg/apache/log4j/Logger;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)V+280
j org.apache.log4j.PropertyConfigurator.configureRootCategory(Ljava/util/Properties;Lorg/apache/log4j/spi/LoggerRepository;)V+63
j org.apache.log4j.PropertyConfigurator.doConfigure(Ljava/util/Properties;Lorg/apache/log4j/spi/LoggerRepository;)V+101
j org.apache.log4j.PropertyConfigurator.doConfigure(Ljava/net/URL;Lorg/apache/log4j/spi/LoggerRepository;)V+103
j org.apache.log4j.helpers.OptionConverter.selectAndConfigure(Ljava/net/URL;Ljava/lang/String;Lorg/apache/log4j/spi/LoggerRepository;)V+129
j org.apache.log4j.LogManager.<clinit>()V+156
v ~StubRoutines::call_stub
j org.apache.log4j.PropertyConfigurator.configure(Ljava/util/Properties;)V+8
j org.openmicroscopy.shoola.env.log.LoggerImpl.<init>(Ljava/util/Properties;Ljava/lang/String;)V+13
j org.openmicroscopy.shoola.env.log.LoggerFactory.makeNew(Lorg/openmicroscopy/shoola/env/Container;)Lorg/openmicroscopy/shoola/env/log/Logger;+286
j org.openmicroscopy.shoola.env.init.LoggerInit.execute()V+12
j org.openmicroscopy.shoola.env.init.Initializer.doInit()V+44
j org.openmicroscopy.shoola.env.Container.runStartupProcedure(Ljava/lang/String;Ljava/lang/String;)V+33
j org.openmicroscopy.shoola.env.Container.access$000(Ljava/lang/String;Ljava/lang/String;)V+2
j org.openmicroscopy.shoola.env.Container$1.run()V+8
j java.lang.Thread.run()V+11
v ~StubRoutines::call_stub

--------------- P R O C E S S ---------------

Java Threads: ( => current thread )
0x04f98c00 JavaThread "TimerQueue" daemon [_thread_blocked, id=5040, stack(0x057d0000,0x05820000)]
0x04f50800 JavaThread "AWT-EventQueue-0" [_thread_in_native, id=5064, stack(0x05740000,0x05790000)]
0x04998c00 JavaThread "Image Fetcher 0" daemon [_thread_blocked, id=540, stack(0x053e0000,0x05430000)]
0x04997400 JavaThread "AWT-Windows" daemon [_thread_in_native, id=1956, stack(0x05350000,0x053a0000)]
0x04de5c00 JavaThread "AWT-Shutdown" [_thread_blocked, id=3452, stack(0x052c0000,0x05310000)]
0x04dd9800 JavaThread "Java2D Disposer" daemon [_thread_blocked, id=4276, stack(0x05230000,0x05280000)]
=>0x04d84000 JavaThread "Initializer" [_thread_in_vm, id=4384, stack(0x04cb0000,0x04d00000)]
0x047ac000 JavaThread "Service Thread" daemon [_thread_blocked, id=832, stack(0x04b90000,0x04be0000)]
0x0053dc00 JavaThread "C1 CompilerThread0" daemon [_thread_blocked, id=2068, stack(0x04b00000,0x04b50000)]
0x0053c800 JavaThread "Attach Listener" daemon [_thread_blocked, id=3184, stack(0x04a70000,0x04ac0000)]
0x00539c00 JavaThread "Signal Dispatcher" daemon [_thread_blocked, id=1880, stack(0x049e0000,0x04a30000)]
0x00530000 JavaThread "Finalizer" daemon [_thread_blocked, id=3700, stack(0x04750000,0x047a0000)]
0x0052b400 JavaThread "Reference Handler" daemon [_thread_blocked, id=4600, stack(0x046c0000,0x04710000)]
0x0204f800 JavaThread "main" [_thread_blocked, id=768, stack(0x00090000,0x000e0000)]

Other Threads:
0x00529800 VMThread [stack: 0x01e30000,0x01e80000] [id=3424]
0x047bdc00 WatcherThread [stack: 0x04c20000,0x04c70000] [id=5048]

VM state:not at safepoint (normal execution)

VM Mutex/Monitor currently owned by a thread: None

Heap
def new generation total 78656K, used 20996K [0x140c0000, 0x19610000, 0x1eb60000)
eden space 69952K, 30% used [0x140c0000, 0x15541218, 0x18510000)
from space 8704K, 0% used [0x18510000, 0x18510000, 0x18d90000)
to space 8704K, 0% used [0x18d90000, 0x18d90000, 0x19610000)
tenured generation total 174784K, used 0K [0x1eb60000, 0x29610000, 0x340c0000)
the space 174784K, 0% used [0x1eb60000, 0x1eb60000, 0x1eb60200, 0x29610000)
compacting perm gen total 12288K, used 2133K [0x340c0000, 0x34cc0000, 0x380c0000)
the space 12288K, 17% used [0x340c0000, 0x342d5450, 0x342d5600, 0x34cc0000)
ro space 10240K, 42% used [0x380c0000, 0x384fe578, 0x384fe600, 0x38ac0000)
rw space 12288K, 54% used [0x38ac0000, 0x3913f0e8, 0x3913f200, 0x396c0000)

Code Cache [0x02610000, 0x02730000, 0x04610000)
total_blobs=451 nmethods=243 adapters=143 free_code_cache=31629Kb largest_free_block=32388544

Compilation events (10 events):
Event: 0.745 Thread 0x0053dc00 227 java.util.HashSet::add (20 bytes)
Event: 0.745 Thread 0x0053dc00 nmethod 227 0x02728788 code [0x02728890, 0x0272893c]
Event: 0.745 Thread 0x0053dc00 228 java.lang.Integer::hashCode (5 bytes)
Event: 0.745 Thread 0x0053dc00 nmethod 228 0x02728988 code [0x02728a80, 0x02728b00]
Event: 0.747 Thread 0x0053dc00 229 java.util.BitSet::get (69 bytes)
Event: 0.747 Thread 0x0053dc00 nmethod 229 0x02728b48 code [0x02728c90, 0x02728fbc]
Event: 0.749 Thread 0x0053dc00 230 java.nio.Buffer::checkIndex (22 bytes)
Event: 0.749 Thread 0x0053dc00 nmethod 230 0x02729248 code [0x02729350, 0x0272944c]
Event: 0.749 Thread 0x0053dc00 231 java.nio.DirectLongBufferU::ix (10 bytes)
Event: 0.749 Thread 0x0053dc00 nmethod 231 0x02729508 code [0x02729600, 0x02729690]

GC Heap History (0 events):
No events

Deoptimization events (0 events):
No events

Internal exceptions (10 events):
Event: 0.747 Thread 0x04d84000 Threw 0x154721d8 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.748 Thread 0x04d84000 Threw 0x15479ae0 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.750 Thread 0x04d84000 Threw 0x15481af0 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.751 Thread 0x04d84000 Threw 0x15488fe8 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.752 Thread 0x04d84000 Threw 0x15491570 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.752 Thread 0x04d84000 Threw 0x1549a158 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.753 Thread 0x04d84000 Threw 0x154a26e0 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.754 Thread 0x04d84000 Threw 0x154aa8e8 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.756 Thread 0x04d84000 Threw 0x154b1090 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166
Event: 0.758 Thread 0x04d84000 Threw 0x154bb080 at C:\jdk7u2_32P\jdk7u4\hotspot\src\share\vm\prims\jvm.cpp:1166

Events (10 events):
Event: 0.754 loading class 0x04f9b0f8
Event: 0.754 loading class 0x04f9b0f8 done
Event: 0.756 loading class 0x04f9a638
Event: 0.756 loading class 0x04f9a638 done
Event: 0.757 loading class 0x04fb87c8
Event: 0.758 loading class 0x04fb87c8 done
Event: 0.758 loading class 0x397eb518
Event: 0.758 loading class 0x397eb518 done
Event: 0.758 loading class 0x04f7eed8
Event: 0.758 loading class 0x04f7eed8 done


Dynamic libraries:
0x00400000 - 0x00432000 C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\OMERO.insight.exe
0x772e0000 - 0x77460000 C:\Windows\SysWOW64\ntdll.dll
0x76bf0000 - 0x76d00000 C:\Windows\syswow64\kernel32.dll
0x76e90000 - 0x76ed6000 C:\Windows\syswow64\KERNELBASE.dll
0x74a50000 - 0x74a68000 C:\Windows\system32\tsappcmp.dll
0x76670000 - 0x7671c000 C:\Windows\syswow64\msvcrt.dll
0x76d60000 - 0x76e60000 C:\Windows\syswow64\USER32.dll
0x76440000 - 0x764d0000 C:\Windows\syswow64\GDI32.dll
0x76750000 - 0x7675a000 C:\Windows\syswow64\LPK.dll
0x76760000 - 0x767fd000 C:\Windows\syswow64\USP10.dll
0x763a0000 - 0x76440000 C:\Windows\syswow64\ADVAPI32.dll
0x76380000 - 0x76399000 C:\Windows\SysWOW64\sechost.dll
0x75550000 - 0x75640000 C:\Windows\syswow64\RPCRT4.dll
0x74e40000 - 0x74ea0000 C:\Windows\syswow64\SspiCli.dll
0x74e30000 - 0x74e3c000 C:\Windows\syswow64\CRYPTBASE.dll
0x76990000 - 0x76aec000 C:\Windows\syswow64\ole32.dll
0x76d00000 - 0x76d60000 C:\Windows\system32\IMM32.DLL
0x74ea0000 - 0x74f6c000 C:\Windows\syswow64\MSCTF.dll
0x746f0000 - 0x7488e000 C:\Windows\WinSxS\x86_microsoft.windows.common-controls_6595b64144ccf1df_6.0.7601.17514_none_41e6975e2bd6f2b2\COMCTL32.DLL
0x75460000 - 0x754b7000 C:\Windows\syswow64\SHLWAPI.dll
0x75640000 - 0x7628a000 C:\Windows\syswow64\SHELL32.DLL
0x742a0000 - 0x745ea000 c:\program files (x86)\java\jre7\bin\client\jvm.dll
0x74b00000 - 0x74b07000 C:\Windows\system32\WSOCK32.dll
0x76340000 - 0x76375000 C:\Windows\syswow64\WS2_32.dll
0x75070000 - 0x75076000 C:\Windows\syswow64\NSI.dll
0x74260000 - 0x74292000 C:\Windows\system32\WINMM.dll
0x76af0000 - 0x76af5000 C:\Windows\syswow64\PSAPI.DLL
0x745f0000 - 0x746ae000 c:\program files (x86)\java\jre7\bin\MSVCR100.dll
0x748c0000 - 0x748cc000 c:\program files (x86)\java\jre7\bin\verify.dll
0x74230000 - 0x74250000 c:\program files (x86)\java\jre7\bin\java.dll
0x74210000 - 0x74223000 c:\program files (x86)\java\jre7\bin\zip.dll
0x74040000 - 0x74182000 C:\Program Files (x86)\Java\jre7\bin\awt.dll
0x75080000 - 0x7510f000 C:\Windows\syswow64\OLEAUT32.dll
0x73fd0000 - 0x73fe3000 C:\Windows\system32\DWMAPI.DLL
0x73fa0000 - 0x73fca000 C:\Program Files (x86)\Java\jre7\bin\fontmanager.dll
0x741e0000 - 0x741f4000 C:\Program Files (x86)\Java\jre7\bin\net.dll
0x74a80000 - 0x74abc000 C:\Windows\system32\mswsock.dll
0x749a0000 - 0x749a6000 C:\Windows\System32\wship6.dll
0x741d0000 - 0x741df000 C:\Program Files (x86)\Java\jre7\bin\nio.dll
0x73f60000 - 0x73f91000 C:\Program Files (x86)\Java\jre7\bin\t2k.dll
0x73e70000 - 0x73f5b000 C:\Windows\system32\DBGHELP.DLL

VM Arguments:
jvm_args: -Dexe4j.semaphoreName=c:_users_administrateur_desktop_omero.clients-beta4.3.3.win_omero.clients-beta4.3.3.win_omero.insight.exe0 -Dexe4j.moduleName=C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\OMERO.insight.exe -Dexe4j.tempDir=C:\Users\ADMINI~1\AppData\Local\Temp\e4jA304.tmp_dir24684 -Dexe4j.unextractedPosition=173893 -Dexe4j.consoleCodepage=cp0 -Xms256M -Xmx512M
java_command: <unknown>
Launcher Type: generic

Environment Variables:
PATH=C:\Users\Administrateur\Desktop\OMERO.clients-Beta4.3.3.win\OMERO.clients-Beta4.3.3.win\.\libs;C:\Python25\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Ice-3.3.1\bin;C:\Python25\;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Ice-3.3.1\bin;c:\program files (x86)\java\jre7\bin
USERNAME=Administrateur
OS=Windows_NT
PROCESSOR_IDENTIFIER=Intel64 Family 6 Model 44 Stepping 2, GenuineIntel



--------------- S Y S T E M ---------------

OS: Windows NT 6.1 , 64 bit Build 7601 Service Pack 1

CPU:total 12 (16 cores per cpu, 2 threads per core) family 6 model 44 stepping 2, cmov, cx8, fxsr, mmx, sse, sse2, sse3, ssse3, sse4.1, sse4.2, popcnt, ht, tsc, tscinvbit, tscinv

Memory: 4k page, physical 16763992k(13535700k free), swap 33526140k(30582260k free)

vm_info: Java HotSpot(TM) Client VM (23.0-b21) for windows-x86 JRE (1.7.0_04-b22), built on May 3 2012 00:03:48 by "java_re" with unknown MS VC++:1600

time: Tue May 29 13:17:23 2012
elapsed time: 1 seconds
chettia02
 
Posts: 113
Joined: Thu May 24, 2012 8:24 am

Re: problem installation Omero.server

Postby chettia02 » Tue May 29, 2012 11:36 am

help plz
chettia02
 
Posts: 113
Joined: Thu May 24, 2012 8:24 am

Re: problem installation Omero.server

Postby cxallan » Tue May 29, 2012 12:50 pm

The original issue is resolved, addressing it on the other thread:

viewtopic.php?f=4&t=1156
cxallan
Site Admin
 
Posts: 509
Joined: Fri May 01, 2009 8:07 am

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