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Getting stage coordinates for non-SPW images in MATLAB

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Getting stage coordinates for non-SPW images in MATLAB

Postby aizzet » Thu Jan 31, 2019 4:45 pm

Hi,
I am looking for a way to access the stage coordinate (x, y, z) in Matlab.
Would anyone know the syntax one should use?
Thank ou for your help!
aizzet
 
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Re: Getting stage coordinates for non-SPW images in MATLAB

Postby Dominik » Fri Feb 01, 2019 10:28 am

You might be able to access that via the Image.StageLabel, see http://downloads.openmicroscopy.org/ome ... ageLabel-- or the Pixels.PlaneInfo see https://downloads.openmicroscopy.org/om ... laneInfo-- (positionX, positionY, positionZ). The StageLabel is not always populated, depends on the image format / reader.

Kind Regards,
Dominik
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Dominik
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