search from OMERO.insight

[bhcho]

then, if I copy the current etc/grid/config.xml after I unpack the zip file to the corresponding location, and run bin/omero admin start, my server runs correctly without losing any previous data in the server?

BK

[jmoore]

Hi BK,

it shouldn't be possible for you to lose any data if you are pointing to the same omero.data.dir (e.g. "/OMERO") and to the same PostgreSQL database ("omero") after the upgrade, which is what config.xml is for.

~Josh.

[bhcho]

Hi All,

From our server (4.2.1), I still cannot retrieve images by querying for Attachment.

As I said, I attached an Experiment File ((output001.cpe.xml like the image below 002.jpg) to an image.
That experiment file is like image 003.jpg.

after this, I tried to search by "Glass" (004.jpg), but still could not retrieve anything.
Do you have any Idea?

And it's strange that I cannot find the attachment file in the Experiments nor in the Protocols from Attachments tab). those files are categorized as "Other files".


Best,
BK

[jmoore]

Would it be possible to get a database dump and a copy of the experiment file, BK? Also, did you add the file after upgrading to 4.2.1 or before?

~J.

[bhcho]

Hi J,

I dont know how to get the database dump. could you tell me how?
I generated that xml file from my local machine and linked it via OMERO.Insight.
Right after that, I could see the file is attached in the "Protocols and Experiments" in the right section of Insight.
However, I could not see the details of the xml file.
So, I open it by clicking the button (a pencil and some dots) and save it as (to server). Then I can found that attachment file as "Experiments" in the "Attachments" tab in the left section of Insight.
And then If I attach that "Experiment" file by selecting from "Uploaded Document", then I now could see the details of the xml file in the "Protocols and Experiments" tab. BUT, as I mentioned before, it does NOT show everything (it shows until some part).

I attached that xml file here.

I added the file after upgrading our server.

BK

[jmoore]

Depending on how you connection to your database, you need something like this:

Code: Select all

pg_dump -U omero omero > omero-db.sql


~J.

[bhcho]

Hi J,

the size of the dump is too big to upload to here. (15M)
could you tell me other way to send this to you?

BK

[jmoore]

Is that 15M compressed, BK? I can probably handle 15M via either email address, but if you could compress it that would be great.

Cheers,
~Josh

[bhcho]

I sent you by email after zipping.

BK

[jmoore]

Got it. I'll take look and get back to you tomorrow. ~J.