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Color problem in "split view figure"

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Color problem in "split view figure"

Postby ppouchin » Wed Jun 21, 2017 2:07 pm

Hello,


One user recently pointed out that the "split view figure" script generates weird colors and does not take those from the image into consideration.
It seems the colours are ok when the script is started from the web though.
Also, in both cases, the name of the first channel mostly becomes a black rectangle...

Is it something specific to our server... ?
Attachments
splitview_bug.jpg
Channels should be green, red and blue...
splitview_bug.jpg (19.65 KiB) Viewed 2539 times
ppouchin
 
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Re: Color problem in "split view figure"

Postby wmoore » Thu Jun 22, 2017 9:54 am

Hi,
I've reproduced the bug in Insight, so we'll look into that...

For the black label, it looks like this is caused by a bug in the rotation of the vertical left label.
This is only an issue when using version 3.1.0 of Pillow (and probably future versions).
I've created a card to fix this https://trello.com/c/rE4VXlX1/33-figure ... labels-bug as we have already done in OMERO.figure: https://github.com/ome/omero-figure/pull/140. However this won't be in time for the imminent 5.3.3 release of OMERO.
In the meantime, you could try to install an older version of Pillow (2.9) as a workaround to see if that fixes the issue (as noted on the PR above).

Regards,

Will.
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Re: Color problem in "split view figure"

Postby wmoore » Thu Jun 22, 2017 11:07 am

I've created a fix for the labels in https://github.com/ome/scripts/pull/135
Although that is unlikely to make it into the 5.3.3 release, once it is tested and merged, you could replace your script with the latest in
Code: Select all
lib/scripts/omero/figure_scripts/Split_View_Figure.py


Regards,

Will.
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Re: Color problem in "split view figure"

Postby ppouchin » Thu Jun 22, 2017 12:19 pm

Thank you!
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Re: Color problem in "split view figure"

Postby Dominik » Fri Jun 23, 2017 10:01 am

Hi,
with Wills help I finally managed to replicate the false color issue when the script is called from Insight.
It should be a simple fix, but like the labels bugfix, it's unlikely to get into the upcoming 5.3.3 release.
Regards,
Dominik
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