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Omero Java API: associated label image

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Omero Java API: associated label image

Postby DiegoG » Mon Nov 27, 2017 1:55 pm

Dear Omero team,
I've got a question. In some image files there are associated images like label images. Is there a chance to get/read that label image with Bio-formats Java API?
Best Regards.
DiegoG
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Re: Omero Java API: associated label image

Postby jmoore » Mon Nov 27, 2017 3:13 pm

Hi DiegoG,

DiegoG wrote: In some image files there are associated images like label images. Is there a chance to get/read that label image with Bio-formats Java API?


Whether or not such labels can be read out is determined on a file-format by file-format basis. Can you tell us what format you are currently working on? Also, can you show us what you've done so far to load the image?

The method you'll need is setSeries to choose images beyond the first (i.e. 0-th) image.

You might also like to take a look at Working with whole slide images.

All the best,
~Josh
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