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"database configuration invalid" error in OMERO 4.2 on WinXP

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"database configuration invalid" error in OMERO 4.2 on WinXP

Postby tuco » Thu May 12, 2011 7:44 pm

My server stopped working some time ago and can't get it running again.
Here is the message I get when I try to start and for diagnostics:

C:\omero_dist>bin\omero admin start
No descriptor given. Using etc\grid\windefault.xml
[SC] CreateService SUCCESS


SERVICE_NAME: OMERO.master
TYPE : 10 WIN32_OWN_PROCESS
STATE : 2 START_PENDING
(NOT_STOPPABLE,NOT_PAUSABLE,IGNORES_SHUTDOWN)
WIN32_EXIT_CODE : 0 (0x0)
SERVICE_EXIT_CODE : 0 (0x0)
CHECKPOINT : 0x0
WAIT_HINT : 0x7d0
PID : 7496
FLAGS :

Waiting on startup. Use CTRL-C to exit
.............................
Failed to startup some components after 5 minutes
Calling "stop" on remaining components

SERVICE_NAME: OMERO.master
TYPE : 10 WIN32_OWN_PROCESS
STATE : 4 RUNNING
(STOPPABLE,NOT_PAUSABLE,ACCEPTS_SHUTDOWN)
WIN32_EXIT_CODE : 0 (0x0)
SERVICE_EXIT_CODE : 0 (0x0)
CHECKPOINT : 0x0
WAIT_HINT : 0x0

[SC] DeleteService SUCCESS

Waiting on shutdown. Use CTRL-C to exit
...
C:\omero_dist>bin\omero admin diagnostics

================================================================================
OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
================================================================================

Commands: java -version 1.6.0 (C:\WINDOWS\system32\java.EXE)
Commands: python -V 2.6.5 (C:\Python26\python.EXE)
Commands: icegridnode --version 3.3.1 (C:\Ice-3.3.1-VC90\bin\icegridnode.EXE)
Commands: icegridadmin --version 3.3.1 (C:\Ice-3.3.1-VC90\bin\icegridadmin.EXE)
Commands: psql --version 8.4.3 (C:\Program Files\PostgreSQL\8.4\bin\psql.EXE)

Server: icegridnode not started

Log dir: C:\omero_dist\var\log exists

Log files: Blitz-0.log 75.0 MB errors=8568 warnings=6067
Log files: DropBox.log 58.0 KB errors=64 warnings=35
Log files: FileServer.log 22.0 KB
Log files: Indexer-0.log 1.0 MB errors=106 warnings=271
Log files: MonitorServer.log 23.0 KB errors=3 warnings=0
Log files: OMEROweb.log 15.0 KB errors=5 warnings=0
Log files: Processor-0.log 4.0 MB errors=1312 warnings=9183
Log files: Processor-0.log.1 4.0 MB errors=1396 warnings=9777
Log files: Processor-0.log.2 4.0 MB errors=1397 warnings=9773
Log files: Processor-0.log.3 4.0 MB errors=1397 warnings=9778
Log files: Processor-0.log.4 4.0 MB errors=1397 warnings=9776
Log files: Processor-0.log.5 4.0 MB errors=1398 warnings=9774
Log files: Processor-0.log.6 4.0 MB errors=1396 warnings=9777
Log files: Processor-0.log.7 4.0 MB errors=1398 warnings=9774
Log files: Processor-0.log.8 4.0 MB errors=1396 warnings=9779
Log files: Processor-0.log.9 4.0 MB errors=1397 warnings=9773
Log files: Tables-0.log n/a
Log files: TestDropBox.log n/a
Log files: master.err 0.0 KB
Log files: master.out 0.0 KB
Log files: Total size 126.83 MB

Parsing Blitz-0.log:[line:25] => Server restarted <=
Parsing Blitz-0.log:[line:37530] => Server restarted <=
Parsing Blitz-0.log:[line:110965] => Server restarted <=
Parsing Blitz-0.log:[line:111117] => Server restarted <=
Parsing Blitz-0.log:[line:129384] => Server restarted <=
Parsing Blitz-0.log:[line:343502] => Server restarted <=
Parsing Blitz-0.log:[line:380925] => Server restarted <=
Parsing Blitz-0.log:[line:436457] => Server restarted <=
Parsing Blitz-0.log:[line:443465] => Server restarted <=
Parsing Blitz-0.log:[line:478912] => Server restarted <=
Parsing Blitz-0.log:[line:499072] => Server restarted <=
Parsing Blitz-0.log:[line:547863] => Server restarted <=
Parsing Blitz-0.log:[line:627500] Your database configuration is invalid
Parsing Blitz-0.log:[line:627508] Your database configuration is invalid
Parsing Blitz-0.log:[line:627527] Your database configuration is invalid
Parsing Blitz-0.log:[line:627542] Your database configuration is invalid
Parsing Blitz-0.log:[line:627550] Your database configuration is invalid
Parsing Blitz-0.log:[line:627573] Your database configuration is invalid
Parsing Blitz-0.log:[line:627637] Your database configuration is invalid
Parsing Blitz-0.log:[line:627645] Your database configuration is invalid
Parsing Blitz-0.log:[line:627664] Your database configuration is invalid
Parsing Blitz-0.log:[line:627679] Your database configuration is invalid
Parsing Blitz-0.log:[line:627687] Your database configuration is invalid
Parsing Blitz-0.log:[line:627710] Your database configuration is invalid
Parsing Blitz-0.log:[line:627774] Your database configuration is invalid
Parsing Blitz-0.log:[line:627782] Your database configuration is invalid
Parsing Blitz-0.log:[line:627801] Your database configuration is invalid
Parsing Blitz-0.log:[line:627816] Your database configuration is invalid
Parsing Blitz-0.log:[line:627824] Your database configuration is invalid
Parsing Blitz-0.log:[line:627847] Your database configuration is invalid
Parsing Blitz-0.log:[line:627911] Your database configuration is invalid
Parsing Blitz-0.log:[line:627919] Your database configuration is invalid
Parsing Blitz-0.log:[line:627938] Your database configuration is invalid
Parsing Blitz-0.log:[line:627953] Your database configuration is invalid
Parsing Blitz-0.log:[line:627961] Your database configuration is invalid
Parsing Blitz-0.log:[line:627984] Your database configuration is invalid
Parsing Blitz-0.log:[line:628048] Your database configuration is invalid
Parsing Blitz-0.log:[line:628056] Your database configuration is invalid
Parsing Blitz-0.log:[line:628075] Your database configuration is invalid
Parsing Blitz-0.log:[line:628090] Your database configuration is invalid
Parsing Blitz-0.log:[line:628098] Your database configuration is invalid
Parsing Blitz-0.log:[line:628121] Your database configuration is invalid
Parsing Blitz-0.log:[line:628185] Your database configuration is invalid
Parsing Blitz-0.log:[line:628193] Your database configuration is invalid
Parsing Blitz-0.log:[line:628212] Your database configuration is invalid
Parsing Blitz-0.log:[line:628227] Your database configuration is invalid
Parsing Blitz-0.log:[line:628235] Your database configuration is invalid
Parsing Blitz-0.log:[line:628258] Your database configuration is invalid
Parsing Blitz-0.log:[line:628322] Your database configuration is invalid
Parsing Blitz-0.log:[line:628330] Your database configuration is invalid
Parsing Blitz-0.log:[line:628349] Your database configuration is invalid
Parsing Blitz-0.log:[line:628364] Your database configuration is invalid
Parsing Blitz-0.log:[line:628372] Your database configuration is invalid
Parsing Blitz-0.log:[line:628395] Your database configuration is invalid
Parsing Blitz-0.log:[line:628459] Your database configuration is invalid
Parsing Blitz-0.log:[line:628467] Your database configuration is invalid
Parsing Blitz-0.log:[line:628486] Your database configuration is invalid
Parsing Blitz-0.log:[line:628501] Your database configuration is invalid
Parsing Blitz-0.log:[line:628509] Your database configuration is invalid
Parsing Blitz-0.log:[line:628532] Your database configuration is invalid
Parsing Blitz-0.log:[line:628596] Your database configuration is invalid
Parsing Blitz-0.log:[line:628604] Your database configuration is invalid
Parsing Blitz-0.log:[line:628623] Your database configuration is invalid
Parsing Blitz-0.log:[line:628638] Your database configuration is invalid
Parsing Blitz-0.log:[line:628646] Your database configuration is invalid
Parsing Blitz-0.log:[line:628669] Your database configuration is invalid
Parsing Blitz-0.log:[line:628733] Your database configuration is invalid
Parsing Blitz-0.log:[line:628741] Your database configuration is invalid
Parsing Blitz-0.log:[line:628760] Your database configuration is invalid
Parsing Blitz-0.log:[line:628775] Your database configuration is invalid
Parsing Blitz-0.log:[line:628783] Your database configuration is invalid
Parsing Blitz-0.log:[line:628806] Your database configuration is invalid
Parsing Blitz-0.log:[line:628870] Your database configuration is invalid
Parsing Blitz-0.log:[line:628878] Your database configuration is invalid
Parsing Blitz-0.log:[line:628897] Your database configuration is invalid
Parsing Blitz-0.log:[line:628912] Your database configuration is invalid
Parsing Blitz-0.log:[line:628920] Your database configuration is invalid
Parsing Blitz-0.log:[line:628943] Your database configuration is invalid
Parsing Blitz-0.log:[line:629007] Your database configuration is invalid
Parsing Blitz-0.log:[line:629015] Your database configuration is invalid
Parsing Blitz-0.log:[line:629034] Your database configuration is invalid
Parsing Blitz-0.log:[line:629049] Your database configuration is invalid
Parsing Blitz-0.log:[line:629057] Your database configuration is invalid
Parsing Blitz-0.log:[line:629080] Your database configuration is invalid

Environment:OMERO_HOME=(unset)
Environment:OMERO_NODE=(unset)
Environment:OMERO_MASTER=(unset)
Environment:Error printing text
PATH=C:\Python26\Scripts;C:\Python26\;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\Pro
gram Files\MATLAB\R2010a\runtime\win32;C:\Program Files\MATLAB\R2010a\bin;C:\Program Files\MATLAB\R2
009a\bin;C:\Program Files\MATLAB\R2009a\bin\win32;C:\Program Files\Common Files\Autodesk Shared\;C:\
Ice-3.3.1-VC90\bin;C:\Program Files\PostgreSQL\8.4\bin;C:\Program Files\QuickTime\QTSystem\;%APPDATA
%\Python\Scripts

Environment:ICE_HOME=(unset)
Environment:LD_LIBRARY_PATH=(unset)
Environment:DYLD_LIBRARY_PATH=(unset)

OMERO data dir: 'D:\\OMERO' Exists? True Is writable? True
OMERO.web status... DEVELOPMENT: You will have to check status by hand!


bliz log attached as zipped file.

Please help!
tuco
 
Posts: 10
Joined: Wed Apr 21, 2010 5:43 pm

Re: "database configuration invalid" error in OMERO 4.2 on W

Postby jmoore » Sat May 14, 2011 1:42 pm

Erdem,

I don't see your files attached. Could you try to attach them again? The error message from the diagnostics output, however, point to something wrong with your database connection:

Code: Select all
...
Parsing Blitz-0.log:[line:629034] Your database configuration is invalid
Parsing Blitz-0.log:[line:629049] Your database configuration is invalid
Parsing Blitz-0.log:[line:629057] Your database configuration is invalid
Parsing Blitz-0.log:[line:629080] Your database configuration is invalid


Didn't anything change in the configuration? Is your database server turned on?

Cheers,
~Josh.
User avatar
jmoore
Site Admin
 
Posts: 1591
Joined: Fri May 22, 2009 1:29 pm
Location: Germany


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