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Bio Formats Export nullpointer exception

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
Please note:
Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

Bio Formats Export nullpointer exception

Postby Oli » Mon Feb 13, 2017 10:13 am

Hi all,

When trying to run Bio-Formats Exporter on any currently open image, I get the following error
Code: Select all
(Fiji Is Just) ImageJ 2.0.0-rc-56/1.51h; Java 1.8.0_66 [64-bit]; Windows 10 10.0; 543MB of 18304MB (2%)

java.lang.NullPointerException
   at loci.plugins.out.Exporter.run(Exporter.java:443)
   at loci.plugins.LociExporter.run(LociExporter.java:75)
   at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:265)
   at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:114)
   at ij.IJ.runUserPlugIn(IJ.java:219)
   at ij.IJ.runPlugIn(IJ.java:181)
   at ij.Executer.runCommand(Executer.java:137)
   at ij.Executer.run(Executer.java:63)
   at java.lang.Thread.run(Thread.java:745)


I am up do date with Fiji and Bioformats according to the update site... Any suggestions would be very welcome.

Best

Oli
Oli
 
Posts: 71
Joined: Mon Nov 29, 2010 4:57 pm

Re: Bio Formats Export nullpointer exception

Postby sbesson » Mon Feb 13, 2017 10:33 am

Hi Oli,

thanks for your quick report. This issue has already been brought to our attention by Jan Eglinger in this issue and we are investigating a fix for this regression.

This will be fixed in the upcoming release of Bio-Formats.

Best,
Sebastien
User avatar
sbesson
Team Member
 
Posts: 421
Joined: Tue Feb 28, 2012 7:20 pm


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