Analysis apps can access images on OMERO and save results back to the server.
OMERO.scripts run on the server itself and can be launched from the clients.
Support for storing analytical results attached to images.View attaching files guide View guide for HCS data
Draw ROIs across multiple dimensions and measure pixel intensity.View Insight user guide Find out more about OMERO.iviewer
Import images and save ROIs, overlays and analysis results from ImageJ/Fiji into OMERO.View user guide View movie
Write scripts to add functionality to OMERO.server and share them with the community.View developer guide View movie
Work with your OMERO data in MATLAB using a plugin.View developer guide View movie
Connect to OMERO in R using rJava and the OMERO Java Gateway.Check out the code repo View movie
An easy-to-use API for OMERO making it easier to work with your data in Python.View developer guide
HDF-based storage of measurement results with an API for exporting to Excel using OMERO.tables.View developer guide
Add functionality to your OMERO installation with community-developed optional apps and plugins
Whole Slide Image analysis that connects to OMERO.Find out more
Scripts for using WND-CHARM, an image classifier, on images stored in OMERO.Find out more
Start OMERO.insight directly within KNIME for image processing.Find out more
FLIM analysis package that connects to OMERO.Find out more