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tissuegnostic files

Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats
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Historical discussions about the Bio-Formats library. Please look for and ask new questions at https://forum.image.sc/tags/bio-formats

If you are having trouble with image files, there is information about reporting bugs in the Bio-Formats documentation. Please send us the data and let us know what version of Bio-Formats you are using. For issues with your code, please provide a link to a public repository, ideally GitHub.

tissuegnostic files

Postby dshumake » Sat Feb 07, 2015 12:20 am

Are the files generated from scanning slides on tissue gnostics (http://www.tissuegnostics.com/) supported by OMERO? I saw that since 4.4.0 there has been enhanced support for "big" images. The final image from tissuegnostics is an array of tiff files that have been stitched together.
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Re: tissuegnostic files

Postby atarkowska » Mon Feb 09, 2015 11:59 am

Hi,

It is unlikely that OMERO/BioFormats supports tissuegnostics slides, although if you send us sample data we will make sure it will be supported. Please upload sample files using our file upload site http://qa.openmicroscopy.org.uk/qa/upload/

Ola
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Re: tissuegnostic files

Postby mlinkert » Tue Feb 10, 2015 5:40 pm

Thank you for uploading sample data. Tissuegnostics data is not currently supported, but there is now a ticket for it on our issue tracking system:

https://trac.openmicroscopy.org.uk/ome/ticket/12730

You have been CC'd on the ticket, and so will receive automatic updates when the ticket status is changed. If you prefer not to be updated, please let us know.

-Melissa
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Re: tissuegnostic files

Postby dshumake » Wed Feb 11, 2015 7:53 pm

Thank you for looking at this. Let me know if you would like more test files.
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