Release of Bio-Formats 6.5.1

Today we are releasing Bio-Formats 6.5.1 which includes the following changes:

File format fixes and improvements:

• Aperio SVS / Aperio AFI
  • fixed a Null Pointer Exception when exposure time is not defined
• Big Data Viewer
  • corrected series indexes for non flattened multi resolution images
• Cellomics
  • physical sizes are now set for all series rather than just the first
• Imspector OBF
  • file format version and stack version are now recorded as part of global metadata
• MetaMorph
  • improved wavelength parsing using Metamorph XML or original metadata
• Mikroscan TIFF
  • stricter format recognition now used to prevent erroneous use of the reader
• Ventana BIF
  • added support for LEFT overlap direction (thanks to Joan Gibert)
• Zeiss CZI
  • fixed a bug to ensure Channel Illumination Type is not overridden by display settings

Documentation improvements:

• added link from OME-TIFF page to commercial partners page
• updated links for Biplane to now use Oxford Instruments
• fixed a number of broken hyperlinks in documentation

Component updates:

• jxrlib was upgraded to 0.2.4

Bio-Formats improvements:

• fixed a bug in bfconvert for multi-series files with varying image sizes
• removed the logging OMERO IDs passed to FormatReader and ImageReader