September 2019 OMERO users workshop

Workshops on how to use OMERO held in Lisbon.

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Registration: Contact the organiser directly

Organiser: INDEPTH as part of WG1 Taggathon in Plant 3D imaging

Location: Instituto Tecnologia Química e Biológica ITQB NOVA, Lisbon

Date: 05 September 2019

Material: Presentation and walkthrough

Duration: A one-day workshop

The Open Microscopy Environment (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data. We support more than 150 image data formats across many imaging modalities including medical imaging, high-content screening and whole-slide imaging. We support and visualize multi-channel 3D timelapse images. OMERO, a component of OME, is a software platform for image data management and analysis which was presented in this course. Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO were shown.

The 1-hour workshop concentrated on basics of OMERO and demonstrated how the OMERO platform can be integrated with tools such as CellProfiler, ImageJ, R.

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