June 2025 OME workshop

The OME Team gave a 3-part workshop on OMERO at IISER (Pune, India).

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Organisers: GBI

Location: IISER, Pune, India

Workshop Part 1: OMERO installation and configuration

Date: 19th June 2025

Duration: 4.5 hours

Workshop Part 2: OMERO imaging workflows

Dates: 19-20th June 2025

Duration: 6 hours

Workshop Part 3: Advanced Analysis with OMERO

Date: 20th June 2025

Duration: 1.5 hours


OMERO, a component of OME, is a software platform for image data management and analysis.

Workshop 1: The installation of OMERO.server and OMERO.web was shown. The participants installed the components of the OMERO software in Ubuntu 22.04 Virtual Machines. The installation of OMERO using Docker images was practiced.

Workshop 2: Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO was shown.

Workshop 3: Advanced analysis using OMERO API was shown. The emphasis was on the OMERO plugin for Fiji, but also the connection between CellPose and OMERO was explored.


Resources available: Presentation & walkthrough

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