March 2024 OME workshops

The OME Team gave 2 workshops on OMERO at the Faculty of Medicine, Gadjah Mada University, Yogyakarta, Indonesia.

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Organisers: Gadjah Mada University

Location: Faculty of Medicine, Gadjah Mada University, Yogyakarta, Indonesia.

Workshop 1: Basic imaging and teaching workflows in OMERO.

Date: 7 March 2024

Workshop 2: Analysis of Images in OMERO using Machine Learning and Deep Learning Software Packages.

Date: 8 March 2024

OMERO, a component of OME, is a software platform for image data management and analysis which was presented in the Workshop 1. Import, organisation, viewing, searching, annotation and publishing of imaging data with OMERO were be shown.

Further, the emphasis was be given on the popular OMERO.figure application. Also, the specific use of OMERO as teaching tool for digital pathology was emphasized.

During the Workshop 2 on the second day, we concentrated on more advanced OMERO topics, showing connections of OMERO with popular 3rd party image analysis machine learning and deep learning packages such as StarDist and CellPose. Also Fiji, Python and using OMERO Python API for running image analysis were shown.

Resources available: Presentation & walkthrough

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