Dundee: Will, Kenny, Petr, Dominik, Mark, June, Helen, Balaji, Jean-Marie, Riad,
Remote: Sebastien, Josh, Andreas, David, Roger, Chris, Melissa, Wilma, Liza, Emil,
Start: 2:00 pm
(2-3 minutes each)
Upcoming 5.4.4 release
Last 2 PRs to go in
Main workflow PR against develop needs to be green.
Need fix to pyramid invalidation PR
Good progress aiming for 1.0 after 5.4.4
Improvements in shape deletion, css tweaks etc.
Multi-viewer workflow - double-click to open new windows
Some merge conflicts to resolve
Next: prep for Trends in Microscopy
12th-14th March - 2 hour workshop.
Jason: show iviewer!
Using outreach server - connection OK etc.
East (infra/IDR 0.5.0)
Recursive builds (oh my)
Roger’s work on coupling & building multiple PRs.
Try this with submodules & a ‘super/meta repository’
read-only work continuing on 5.4 session manager
mini-idr 2.0 - Scripts to import plate from each study
The dreaded Hibernate 5+ (Riad)
Up and running
Each user to create submodule on repo above
Coming: devspace k8s app
Move more resources - squig etc.
/ome on various boxes
Not sure if we’ll take the time to get Samba running
Training microservices on Thursday.
Prepping OMERO 5.4 updates for customers
Cross-group support for rendering plugin
Handling large number of channels, especially wrt ROIs
Exploring new tech e.g. communication between server components
Elmi: workshops 2 slots of 1h June
Users meeting: Jason thinking about speakers…? Suggestions?
Aim for shorter talks, more community focus.
IDR update, community update, what else?
JM: publishing workflows, interactive figures etc?
Open registration to externals by end of week.
Liza is working on banner for website.
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)
JRS: works on dataset? Yes
PW: heatmap in grid? Could do. Single value
PW: fantastic, exactly what’s wanted in recent feedback
Except they want for all data
E.g. search result data
WM: yes, center panel should be enabled for search results
JMB: even cross-plate or cross-project results.
WM: UI like in insight
WM: but center panel currently expects the tree to be there
expected by the center panel
PW: how will plugin work with paginated dataset?
WM: haven’t tried yet.
be loaded. Hope to adjust the page size.
JAM: cF. “human cells” on IDR (2.4M)
you get beyond a trivial number of images (few hundred) [it] falls apart. Even for querying across a screen, will need to eventually filter server-side.
and it’s small enough, then filter (render, etc.) locally. Otherwise, server-side.
want it immediately for more reasonably sized datasets. Useful query would be across the screen, that’s the important experimental concept.
WM: worth trying to find the limits? JRS/CA/…: yes.
feedback that below a certain size it’s not useful.
CA: try cellprofiler for real metrics? 30-40 columns.
wouldn’t want to type in map k/v CA: perhaps have a limited vocabulary, e.g `roi_count > 50`
(rating, name), i.e. are we replacing the current center panel or maintaining both? JMB: similar to iviewer migration…
CA: already much better
WM: don’t currently support the multiple well at the bottom
JRS: evaluating replacing current with this next-generation
Already get quite a lot.
JMB: exporting the current view (PDF, JPEG) is good.
PW: cF. buried Excel export (recently asked for)
KG: exporting the search results (search query itself)
CA: need the repository to be migrated
MC: on gitlab?
JMB: also need pip installation
CA: interested before end of March
Find the limit
Show heat-maps as default (no thumbnails)
New name? (Several votes for “parade”)
have figure tab” Users may not be able to connect the dots to “parade” WM: googlable name is perhaps enough. PW: how to know what to google. CA: don’t know the name buys you much. PW: “filter(ing)” CA: but it’s searching
Trajectory of development
First releases for one set of use cases (smallish, local, …)
Scaling-up / server-side