Dundee: Will, Kenny, June, Mark, Dominik, Simon, Helen, Petr,
Remote: Sebastien, Josh, Andreas, David, Melissa, Liza, Chris
Start: 2:00 pm
(2-3 minutes each)
Making all data used in training public.
Targeting Users Meeting
Still some to go & docs
Some feedback and PR fixes
Current PRs not being merged - mgmt tools change
Testing sheet. Mostly Big Images but others too.
Iviewer - few smaller PRs for 1.0.0 release
IDR analysis testing
50% of notebooks not passing
East (infra/IDR 0.5.0)
released as 5.4.6-rc1
No change to mainline build yet, but tag is stable
Consider merging to develop and working on 5.4.6-rc2
Merged into idr metadata 0.5.4
Few UI issues, but existed on prod47 already
J-m: need to disable script
Beyond: HPA and other datasets
Starting to import Human Protein Atlas data.
LOTs of Datasets to handle in webclient UI.
Bio-Formats 5.9: tiffpyramids PR open and tests passing
Review whether tiff pyramids are giving expected behaviour
Please review PR if interested before it is merged to ‘East’
Kenny: GDPR & Brexit warning
Some domains may need revoking
i.e. *.eu may get yanked.
Seb: will follow up on GDPR re: personal info soon.
Glencoe - 14:19
OMERO.parade work in progress towards 0.1.0
File-handle leakage PR still open
Josh - candidate for 5.4.6-rc2
Set environment variables?
Chris: depends on Python versions but probably yes.
No good reason to have many Python threads per workers
Pin in settings.py?
Or on gunicorn launch.
Easy-install fails on older systems - e.g. we have several older CentOS
Upgrade setup_tools and use recent pip.
Tested via IDR deployment workflow
Users’ Meeting, June:
Registrations progressing as expected
Similar logistics to last year, rooms catering etc.
Need to start settling workshops, names etc.
JM: discuss this week: 2-3pm on Thursday (Jason travelling)
Kenny: testing network at Dalhousie this week - any URLs we
know to test
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)