Dundee: Will, Petr, Kenny, Simon, Mark, Dominik, Jean-Marie, Riad, Jason,
Remote: Josh, Sebastien, Melissa, David, Andreas, Chris, Wilma, Liza
Start: 2:00 pm
(2-3 minutes each)
provided simple utility wholly client-side to report duration metrics except for pyramids
aspects of import
finished yet): \#5783
import UI to avoid conflicts. Dom to do this.
to date or push by a day or two?
High levels of community requests. Forums, QAs etc.
IDR HPA dataset to start importing
Jason: size of images?
→ Main topic demo
reply to our email about network)
Looking at adding Orbit to the list
Jason: ITR (image tool resource) public list of tools
Want to link to working demo using IDR data.
Good showcase for OME, especially outreach work.
Notebooks to go in idr-notebooks repo
ITR also contains tools that are not linked to our
OMERO 5.4.7 (Josh)
Several critical items on the board
Aim for August release - need to pick a date
microservice testing & caching
Concurrency issues with high request counts
Melissa to work on OME-TIFF pyramid read/write in C++ & Java
Emil & JM looking at CellProfiler. Versions etc.
Andreas. Exporting pathviewer views
EBI Imaging (HCA/BIA)
Upcoming meeting (Jason)
Scope of meeting being discussed and solidified.
Just Josh & Jason to attend
Biostudies - IDR data linking solidified
Python/C++ efforts (Josh)
OME Files py Docker builds
Archiving images (paper)
IDR (paper) - still not open
Long-term goals request. ETA for outline tomorrow(ish)
#OME-SSBD slack channel
Others discussing metadata issues via community
Bio-hackathons in Japan and Paris (see link above)
Instrument metadata in RDF
FYI: Discussion with Marcus Fantham
New version of FPBioimage available
OMERO.fpbioimage to link to repo to load on-the-fly
Require some adjustment to our web plugin. Probably a summer
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)
demo etc in Dundee
Grafana UI displays data from prometheus-global. Doesn’t store data.