Remote: Simon, Frances, JM, Kenny, Riad, Dom, Petr, Josh, Wilma, Seb, Melissa, Chris, Andreas, Emil
Start: 2:00 pm
(2-3 minutes each)
Bio-Formats 6.0.0-m3 (Seb)
Several requests for new functionality
Downsampling (pyramids) + writing performance
To be tested by collaborators
S3 status (Simon):
Looking into HPA as a example use-case
authenticated remote URLs, and for OMERO to differentiate between files and remote URLs
spacetx datasets. These have been imported into OMERO as well as viewed in starfish notebooks. See current drawing for the grant proposal (going in today)
(companion files for TIFs on disk)
Currently going into test60
IDR fixes + BF6 backports
known to be broken
testing for initial release. Petr has started to take a look. Current blockers are licensing question (GPLv2+?), code review, testing/CI, possible move to GitHub in making repository public. Some clear manageable to-do’s identified for subsequent release. Larger issues are: OME-XML is the only metadata export format offered; OME model coverage is light because OMERO’s for import/export is correspondingly light and yet to choose how to improve coverage.
OMERO 5.4.10 and PR freeze (JM):
Required to fix Fiji training blocker
PR to consider EOB tomorrow so we can release next week
Insight version working with smuggler. To be included in the
the permission system admin (light) vs normal user. Doesn’t seem to be related to particular web sections. Mark and Riad investigating.
iviewer to be released for next workshop (0.6.0)
Cambridge training (JM):
of the month.
Training image is currently broken.
Some OMERO PRs
Several BioFormats issues, some already backported to
Turku, I2K, Cambridge, workshops
Euro-BioImaging EBIB (Josh):
Aim is to facilitate communication with industry
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)