Remote: Simon, Frances, Kenny, Mark, Dom, Riad, Jason, Josh, Liza, Chris, June, Seb, Melissa, Andreas, Wilma, David,
Start: 2:00 pm
(2-3 minutes each)
Seb: Bio-Formats 6 - upcoming freeze steps
JRS: NIH directors etc. interested in the #industry linkage
Milestone release before Christmas
also roadmap in #hca.
existing and new IDR datasets
options. Drafted introductory blog post. Plan to chat to Jean-Marie about what more needs done to release.
with build dependencies
allow Django to store sessions in PostgreSQL as an alternative to Redis
See open PRs
card</u>](https://trello.com/c/bQjVIQlS/226-ascb-embo-2018-7-9-dec-2018) e.g. BDV test data
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)
N5 (tree of JSON files with pointers to tensors chunked into smaller files, optimised for parallel compute including writing) but N5 is still insufficient. Upcoming discussions on migrating BDV to N5.
(variant of HDF5)
Jean-Karim promoting it; Galaxy / KNIME
JRS: EOSC is a virtual cloud of clouds…
BIA is part of EOSC, officially approved by EMBL, will be built
Something worth anticipating for future outreach sessions (Web port over SSL)?
(visualization and validation)
manual labelling, secondary channels etc
and tissues (also clear data)
segmentation, stitching, visualization tools working with BDV
Interest in having ground truth and labels in IDR.
Funding & “Research Software Engineering”
Next meeting: 2020 in Madison